Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3368

Experiment: BHIS with Rifampicin 0.0000244140625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3367 and BT3368 are separated by 103 nucleotidesBT3368 and BT3369 are separated by 4 nucleotides BT3367: BT3367 - putative glycosyltransferase (NCBI ptt file), at 4,343,047 to 4,344,210 BT3367 BT3368: BT3368 - putative glycosyltransferase (NCBI ptt file), at 4,344,314 to 4,345,477 BT3368 BT3369: BT3369 - putative glycosyltransferase (NCBI ptt file), at 4,345,482 to 4,346,723 BT3369 Position (kb) 4344 4345 4346Strain fitness (log2 ratio) -2 -1 0 1 2at 4343.706 kb on - strand, within BT3367at 4344.208 kb on + strandat 4344.222 kb on + strandat 4344.235 kb on + strandat 4344.754 kb on + strand, within BT3368at 4345.271 kb on - strand, within BT3368at 4345.462 kb on + strandat 4345.483 kb on + strandat 4345.484 kb on - strandat 4345.640 kb on - strand, within BT3369at 4345.836 kb on + strand, within BT3369at 4345.839 kb on - strand, within BT3369at 4345.839 kb on - strand, within BT3369at 4346.056 kb on - strand, within BT3369

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Rifampicin 0.0000244140625 mM
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4,343,706 - BT3367 0.57 -0.7
4,344,208 + -1.5
4,344,222 + +0.3
4,344,235 + +1.9
4,344,754 + BT3368 0.38 -0.7
4,345,271 - BT3368 0.82 -2.2
4,345,462 + -1.7
4,345,483 + -0.3
4,345,484 - -0.1
4,345,640 - BT3369 0.13 +0.3
4,345,836 + BT3369 0.29 -2.7
4,345,839 - BT3369 0.29 -1.3
4,345,839 - BT3369 0.29 -1.3
4,346,056 - BT3369 0.46 -2.5

Or see this region's nucleotide sequence