Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trpS and DVU0143 are separated by 11 nucleotides DVU0143 and rfaE are separated by 225 nucleotides
DVU0142: trpS - tryptophanyl-tRNA synthetase (TIGR), at 177,038 to 178,027
trpS
DVU0143: DVU0143 - conserved hypothetical protein (TIGR), at 178,039 to 178,815
DVU0143
DVU0144: rfaE - cytidyltransferase-related domain protein (TIGR), at 179,041 to 179,643
rfaE
Position (kb) 178
179 Strain fitness (log2 ratio) -1
0
1 at 178.021 kb on + strand at 178.029 kb on - strand at 178.111 kb on + strand at 178.135 kb on + strand, within DVU0143 at 178.168 kb on - strand, within DVU0143 at 178.178 kb on + strand, within DVU0143 at 178.246 kb on + strand, within DVU0143 at 178.264 kb on - strand, within DVU0143 at 178.269 kb on - strand, within DVU0143 at 178.345 kb on - strand, within DVU0143 at 178.378 kb on - strand, within DVU0143 at 178.443 kb on + strand, within DVU0143 at 178.443 kb on + strand, within DVU0143 at 178.451 kb on - strand, within DVU0143 at 178.451 kb on - strand, within DVU0143 at 178.456 kb on - strand, within DVU0143 at 178.512 kb on + strand, within DVU0143 at 178.713 kb on + strand, within DVU0143 at 178.719 kb on + strand, within DVU0143 at 178.761 kb on + strand at 178.764 kb on - strand at 178.774 kb on - strand at 178.775 kb on - strand at 178.809 kb on + strand at 178.909 kb on - strand at 178.909 kb on - strand at 178.944 kb on + strand at 178.949 kb on + strand at 178.960 kb on + strand at 179.039 kb on - strand at 179.039 kb on - strand at 179.637 kb on + strand at 179.645 kb on - strand at 179.645 kb on - strand at 179.665 kb on + strand at 179.783 kb on - strand at 179.793 kb on - strand at 179.802 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 178,021 + -0.4 178,029 - -0.0 178,111 + -0.0 178,135 + DVU0143 0.12 -0.7 178,168 - DVU0143 0.17 +0.1 178,178 + DVU0143 0.18 -0.9 178,246 + DVU0143 0.27 -1.6 178,264 - DVU0143 0.29 -0.4 178,269 - DVU0143 0.30 -0.5 178,345 - DVU0143 0.39 -0.1 178,378 - DVU0143 0.44 +0.2 178,443 + DVU0143 0.52 +0.8 178,443 + DVU0143 0.52 -0.6 178,451 - DVU0143 0.53 -0.9 178,451 - DVU0143 0.53 +0.8 178,456 - DVU0143 0.54 -0.3 178,512 + DVU0143 0.61 -0.8 178,713 + DVU0143 0.87 -1.6 178,719 + DVU0143 0.88 +0.3 178,761 + -0.1 178,764 - -0.2 178,774 - +0.5 178,775 - +1.3 178,809 + -0.3 178,909 - -1.6 178,909 - -0.6 178,944 + -1.0 178,949 + +0.4 178,960 + +0.1 179,039 - -0.6 179,039 - +0.1 179,637 + -0.0 179,645 - +0.2 179,645 - -1.2 179,665 + +0.9 179,783 - -0.3 179,793 - -0.4 179,802 + -0.1
Or see this region's nucleotide sequence