Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2561

Experiment: Formate/Acetate-Sulfite (10/60-20 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfite (10/60-20 mM)
2,671,838	+	bioA	DVU2559	0.62	+0.4
2,671,939	+	bioA	DVU2559	0.68	-0.7
2,671,951	+	bioA	DVU2559	0.69	+0.4
2,671,961	-	bioA	DVU2559	0.70	-0.2
2,671,967	+	bioA	DVU2559	0.70	-1.2
2,671,967	+	bioA	DVU2559	0.70	-0.3
2,671,969	-	bioA	DVU2559	0.70	+0.3
2,671,975	-	bioA	DVU2559	0.71	-1.4
2,671,995	+	bioA	DVU2559	0.72	-2.7
2,672,071	-	bioA	DVU2559	0.77	-0.2
2,672,117	-	bioA	DVU2559	0.79	-0.5
2,672,127	+	bioA	DVU2559	0.80	+0.5
2,672,127	+	bioA	DVU2559	0.80	+0.1
2,672,140	-	bioA	DVU2559	0.81	-0.5
2,672,160	+	bioA	DVU2559	0.82	-0.1
2,672,285	+	bioA	DVU2559	0.90	+0.8
2,672,285	+	bioA	DVU2559	0.90	+0.3
2,672,293	-				+1.0
2,672,396	-				-0.5
2,672,422	-				-2.3
2,672,456	-				-1.4
2,672,509	-		DVU2560	0.16	-0.2
2,672,519	-		DVU2560	0.18	-0.3
2,672,576	-		DVU2560	0.33	-0.3
2,672,662	+		DVU2560	0.55	-1.1
2,672,672	+		DVU2560	0.58	+0.5
2,672,674	-		DVU2560	0.58	-0.2
2,672,684	+		DVU2560	0.61	+0.1
2,672,695	-		DVU2560	0.64	-0.2
2,672,702	-		DVU2560	0.65	-0.0
2,672,728	+		DVU2560	0.72	+0.1
2,672,830	+				+0.7
2,672,853	+				-0.2
2,672,904	+				+2.2
2,672,906	+				+0.1
2,672,914	-				+0.6
2,672,914	-				-0.9
2,672,931	-				+0.1
2,672,953	+		DVU2561	0.12	-0.4
2,673,041	-		DVU2561	0.20	-1.5
2,673,077	-		DVU2561	0.24	+0.8
2,673,106	+		DVU2561	0.27	-0.4
2,673,114	-		DVU2561	0.27	-0.3
2,673,124	-		DVU2561	0.28	+0.2
2,673,127	+		DVU2561	0.29	+0.1
2,673,127	+		DVU2561	0.29	-0.3
2,673,127	+		DVU2561	0.29	-0.5
2,673,127	+		DVU2561	0.29	-0.5
2,673,135	-		DVU2561	0.29	-0.2
2,673,135	-		DVU2561	0.29	-0.9
2,673,135	-		DVU2561	0.29	-0.9
2,673,135	-		DVU2561	0.29	+0.0
2,673,145	-		DVU2561	0.30	+1.5
2,673,153	+		DVU2561	0.31	-0.3
2,673,165	+		DVU2561	0.32	-0.9
2,673,197	-		DVU2561	0.35	-0.9
2,673,301	-		DVU2561	0.46	+0.2
2,673,454	-		DVU2561	0.60	-1.8
2,673,463	+		DVU2561	0.61	-0.1
2,673,501	+		DVU2561	0.65	-0.0
2,673,501	+		DVU2561	0.65	-0.1
2,673,506	+		DVU2561	0.66	-2.0
2,673,506	+		DVU2561	0.66	+0.4
2,673,512	-		DVU2561	0.66	-0.6
2,673,528	-		DVU2561	0.68	+0.3
2,673,605	+		DVU2561	0.75	+0.1
2,673,622	+		DVU2561	0.77	-0.2
2,673,622	+		DVU2561	0.77	+0.3
2,673,743	+		DVU2561	0.89	-0.2
2,673,894	+				-0.2
2,673,895	-				-0.9
2,673,900	-				-0.4
2,673,900	-				-0.2
2,673,902	-				-0.3
2,673,983	-				-0.1
2,674,059	+	acpP	DVU2562	0.24	+1.0
2,674,109	-	acpP	DVU2562	0.37	-0.5
2,674,109	-	acpP	DVU2562	0.37	-0.2
2,674,143	+	acpP	DVU2562	0.45	-0.4
2,674,186	-	acpP	DVU2562	0.55	+0.3
2,674,240	-	acpP	DVU2562	0.69	+0.6
2,674,304	+	acpP	DVU2562	0.84	+0.4
2,674,344	+				+0.5
2,674,349	+				-0.4
2,674,378	-				-0.6
2,674,394	+				-0.1
2,674,427	+				-2.8
2,674,429	+				+0.5
2,674,471	+				-0.2
2,674,531	+				-1.2
2,674,539	-				-0.4
2,674,541	+				-0.1
2,674,541	+				-0.1
2,674,544	-				-0.1
2,674,546	+				+0.0
2,674,549	-				-0.5
2,674,642	+				-0.4
2,674,715	-				+0.5
2,674,732	+				+0.6
2,674,754	-				+0.1
2,674,785	+				-0.4
2,674,793	-	fabF	DVU2563	0.10	-0.6
2,674,806	+	fabF	DVU2563	0.11	+0.0