Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0651

Experiment: Formate/Acetate-Sulfite (10/60-20 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0650 and DVU0651 are separated by 626 nucleotidesDVU0651 and cheV-2 are separated by 139 nucleotides DVU0650: DVU0650 - chelatase, putative (TIGR), at 720,601 to 721,494 DVU0650 DVU0651: DVU0651 - membrane protein, putative (TIGR), at 722,121 to 723,209 DVU0651 DVU0652: cheV-2 - chemotaxis protein CheV (TIGR), at 723,349 to 724,299 cheV-2 Position (kb) 722 723 724Strain fitness (log2 ratio) -2 -1 0 1 2at 721.152 kb on - strand, within DVU0650at 721.154 kb on - strand, within DVU0650at 721.171 kb on + strand, within DVU0650at 721.223 kb on + strand, within DVU0650at 721.288 kb on + strand, within DVU0650at 721.344 kb on + strand, within DVU0650at 721.437 kb on - strandat 721.477 kb on - strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.548 kb on + strandat 721.556 kb on - strandat 721.556 kb on - strandat 721.556 kb on - strandat 721.584 kb on - strandat 721.672 kb on - strandat 721.674 kb on + strandat 721.674 kb on + strandat 721.682 kb on - strandat 721.732 kb on - strandat 721.739 kb on - strandat 721.780 kb on - strandat 721.813 kb on - strandat 721.825 kb on - strandat 721.844 kb on - strandat 721.881 kb on + strandat 721.895 kb on - strandat 721.914 kb on - strandat 721.918 kb on + strandat 721.988 kb on + strandat 722.008 kb on - strandat 722.013 kb on + strandat 722.046 kb on + strandat 722.054 kb on - strandat 722.056 kb on + strandat 722.138 kb on - strandat 722.143 kb on + strandat 722.151 kb on - strandat 722.188 kb on - strandat 722.195 kb on + strandat 722.207 kb on + strandat 722.210 kb on - strandat 722.254 kb on + strand, within DVU0651at 722.305 kb on - strand, within DVU0651at 722.320 kb on - strand, within DVU0651at 722.326 kb on + strand, within DVU0651at 722.374 kb on - strand, within DVU0651at 722.435 kb on + strand, within DVU0651at 722.474 kb on + strand, within DVU0651at 722.478 kb on - strand, within DVU0651at 722.558 kb on + strand, within DVU0651at 722.572 kb on - strand, within DVU0651at 722.623 kb on + strand, within DVU0651at 722.631 kb on - strand, within DVU0651at 722.654 kb on - strand, within DVU0651at 722.768 kb on + strand, within DVU0651at 722.807 kb on + strand, within DVU0651at 722.807 kb on + strand, within DVU0651at 722.807 kb on + strand, within DVU0651at 722.875 kb on + strand, within DVU0651at 722.885 kb on - strand, within DVU0651at 722.924 kb on - strand, within DVU0651at 722.986 kb on - strand, within DVU0651at 722.998 kb on - strand, within DVU0651at 722.998 kb on - strand, within DVU0651at 723.073 kb on - strand, within DVU0651at 723.090 kb on + strand, within DVU0651at 723.098 kb on - strand, within DVU0651at 723.116 kb on + strandat 723.184 kb on + strandat 723.184 kb on + strandat 723.191 kb on + strandat 723.192 kb on - strandat 723.282 kb on + strandat 723.282 kb on + strandat 723.290 kb on - strandat 723.339 kb on + strandat 723.512 kb on + strand, within cheV-2at 723.600 kb on - strand, within cheV-2at 723.605 kb on + strand, within cheV-2at 723.615 kb on + strand, within cheV-2at 723.643 kb on - strand, within cheV-2at 723.643 kb on - strand, within cheV-2at 723.703 kb on + strand, within cheV-2at 723.767 kb on + strand, within cheV-2at 723.767 kb on + strand, within cheV-2at 723.778 kb on + strand, within cheV-2at 723.809 kb on - strand, within cheV-2at 723.885 kb on + strand, within cheV-2at 723.995 kb on + strand, within cheV-2at 724.003 kb on - strand, within cheV-2at 724.106 kb on + strand, within cheV-2at 724.106 kb on + strand, within cheV-2at 724.106 kb on + strand, within cheV-2at 724.114 kb on - strand, within cheV-2at 724.163 kb on - strand, within cheV-2at 724.165 kb on - strand, within cheV-2at 724.198 kb on + strand, within cheV-2

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM)
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721,152 - DVU0650 0.62 -0.3
721,154 - DVU0650 0.62 -0.5
721,171 + DVU0650 0.64 -1.2
721,223 + DVU0650 0.70 -0.6
721,288 + DVU0650 0.77 +0.6
721,344 + DVU0650 0.83 -0.5
721,437 - -1.4
721,477 - +0.2
721,548 + -2.2
721,548 + -0.6
721,548 + -0.4
721,548 + -0.4
721,548 + -0.1
721,548 + -0.0
721,548 + +1.6
721,556 - -0.1
721,556 - +0.1
721,556 - -0.4
721,584 - +0.2
721,672 - -0.1
721,674 + +0.2
721,674 + +0.3
721,682 - -0.1
721,732 - +0.4
721,739 - -1.9
721,780 - -0.3
721,813 - -2.2
721,825 - -0.5
721,844 - +0.0
721,881 + -0.0
721,895 - -0.1
721,914 - +0.3
721,918 + -2.1
721,988 + -0.2
722,008 - -0.4
722,013 + -0.3
722,046 + -0.0
722,054 - -0.2
722,056 + -0.5
722,138 - +0.7
722,143 + -0.6
722,151 - +0.3
722,188 - +0.3
722,195 + +0.9
722,207 + +0.7
722,210 - -0.3
722,254 + DVU0651 0.12 -1.5
722,305 - DVU0651 0.17 -0.3
722,320 - DVU0651 0.18 -0.4
722,326 + DVU0651 0.19 +0.3
722,374 - DVU0651 0.23 -0.4
722,435 + DVU0651 0.29 +1.0
722,474 + DVU0651 0.32 -0.4
722,478 - DVU0651 0.33 -0.6
722,558 + DVU0651 0.40 -0.7
722,572 - DVU0651 0.41 -0.9
722,623 + DVU0651 0.46 +0.6
722,631 - DVU0651 0.47 -0.3
722,654 - DVU0651 0.49 -0.4
722,768 + DVU0651 0.59 -0.4
722,807 + DVU0651 0.63 -1.1
722,807 + DVU0651 0.63 +0.2
722,807 + DVU0651 0.63 +0.1
722,875 + DVU0651 0.69 +0.4
722,885 - DVU0651 0.70 -1.0
722,924 - DVU0651 0.74 -0.5
722,986 - DVU0651 0.79 -2.7
722,998 - DVU0651 0.81 -0.4
722,998 - DVU0651 0.81 -0.5
723,073 - DVU0651 0.87 +2.0
723,090 + DVU0651 0.89 +0.6
723,098 - DVU0651 0.90 -1.2
723,116 + +0.1
723,184 + -0.7
723,184 + +0.1
723,191 + +0.3
723,192 - -1.0
723,282 + -1.1
723,282 + +0.2
723,290 - +1.2
723,339 + -0.0
723,512 + cheV-2 DVU0652 0.17 +0.9
723,600 - cheV-2 DVU0652 0.26 +0.3
723,605 + cheV-2 DVU0652 0.27 -1.0
723,615 + cheV-2 DVU0652 0.28 +0.5
723,643 - cheV-2 DVU0652 0.31 -0.5
723,643 - cheV-2 DVU0652 0.31 -0.7
723,703 + cheV-2 DVU0652 0.37 -0.6
723,767 + cheV-2 DVU0652 0.44 -0.1
723,767 + cheV-2 DVU0652 0.44 -0.8
723,778 + cheV-2 DVU0652 0.45 +0.5
723,809 - cheV-2 DVU0652 0.48 -0.5
723,885 + cheV-2 DVU0652 0.56 +1.2
723,995 + cheV-2 DVU0652 0.68 -0.3
724,003 - cheV-2 DVU0652 0.69 +0.2
724,106 + cheV-2 DVU0652 0.80 -0.4
724,106 + cheV-2 DVU0652 0.80 +0.1
724,106 + cheV-2 DVU0652 0.80 +0.8
724,114 - cheV-2 DVU0652 0.80 -0.0
724,163 - cheV-2 DVU0652 0.86 +0.4
724,165 - cheV-2 DVU0652 0.86 +0.6
724,198 + cheV-2 DVU0652 0.89 -0.0

Or see this region's nucleotide sequence