Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5092

Experiment: library passed through aphids in food, 24 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 24 hours
6,041,780	-		Psyr_5091	0.72	-0.1
6,041,793	+		Psyr_5091	0.72	+0.4
6,041,794	-		Psyr_5091	0.72	+0.3
6,041,956	+		Psyr_5091	0.82	-0.5
6,042,010	+		Psyr_5091	0.85	+2.1
6,042,011	-		Psyr_5091	0.85	-0.9
6,042,011	-		Psyr_5091	0.85	-0.4
6,042,043	+		Psyr_5091	0.87	-0.4
6,042,043	+		Psyr_5091	0.87	+0.1
6,042,043	+		Psyr_5091	0.87	+0.1
6,042,044	-		Psyr_5091	0.87	+0.4
6,042,044	-		Psyr_5091	0.87	-0.9
6,042,044	-		Psyr_5091	0.87	-0.5
6,042,044	-		Psyr_5091	0.87	+0.6
6,042,044	-		Psyr_5091	0.87	-0.5
6,042,044	-		Psyr_5091	0.87	-1.4
6,042,044	-		Psyr_5091	0.87	+0.3
6,042,044	-		Psyr_5091	0.87	-0.1
6,042,044	-		Psyr_5091	0.87	-0.2
6,042,044	-		Psyr_5091	0.87	+0.8
6,042,052	+		Psyr_5091	0.87	-0.5
6,042,052	+		Psyr_5091	0.87	+0.1
6,042,053	-		Psyr_5091	0.87	+0.1
6,042,053	-		Psyr_5091	0.87	+0.2
6,042,053	-		Psyr_5091	0.87	+0.1
6,042,053	-		Psyr_5091	0.87	-0.8
6,042,053	-		Psyr_5091	0.87	+0.3
6,042,053	-		Psyr_5091	0.87	+0.8
6,042,066	+		Psyr_5091	0.88	-0.3
6,042,109	+				+0.2
6,042,109	+				-0.9
6,042,109	+				+0.5
6,042,110	-				-0.3
6,042,110	-				-1.3
6,042,110	-				+0.0
6,042,110	-				-0.7
6,042,110	-				-1.4
6,042,110	-				+0.4
6,042,110	-				-0.9
6,042,110	-				-0.0
6,042,110	-				+0.1
6,042,147	+				-0.9
6,042,147	+				-0.6
6,042,147	+				+0.7
6,042,147	+				+0.2
6,042,147	+				-0.4
6,042,148	-				+0.7
6,042,148	-				-0.1
6,042,148	-				-0.4
6,042,205	-				+0.2
6,042,205	-				-0.2
6,042,253	+				-0.1
6,042,267	-				-0.0
6,042,322	-				-0.7
6,042,353	+				-0.1
6,042,354	-				-0.2
6,042,354	-				+0.6
6,042,368	-				-0.1
6,042,371	-				-2.1
6,042,371	-				+0.8
6,042,379	+				-1.1
6,042,390	-				-0.9
6,042,397	-				-0.2
6,042,416	+				+0.3
6,042,416	+				-0.5
6,042,417	-				-0.5
6,042,428	+				-2.0
6,042,432	+				-0.5
6,042,432	+				+0.5
6,042,433	-				+0.4
6,042,463	-				-0.4
6,042,463	-				-0.8
6,042,464	+				-0.1
6,042,464	+				+0.1
6,042,464	+				+0.4
6,042,464	+				+1.3
6,042,464	+				+0.2
6,042,465	-				-0.7
6,042,465	-				-1.5
6,042,466	+				+0.5
6,042,466	+				+0.8
6,042,466	+				+0.5
6,042,466	+				-1.2
6,042,467	-				+0.3
6,042,474	+				+0.1
6,042,474	+				-0.5
6,042,475	-				-0.4
6,042,477	-				-0.1
6,042,480	+				-0.9
6,042,480	+				+0.1
6,042,481	-				+1.0
6,042,481	-				+1.3
6,042,481	-				-0.2
6,042,481	-				-0.2
6,042,482	+				+1.7
6,042,482	+				-0.7
6,042,483	-				-0.2
6,042,483	-				+0.0
6,042,484	+				-0.1
6,042,484	+				+0.2
6,042,484	+				+0.1
6,042,485	-				-0.7
6,042,512	+				+1.7
6,042,522	-				+0.5
6,042,522	-				-0.2
6,042,566	-				+0.4
6,042,575	+				+0.4
6,042,575	+				+0.2
6,042,851	+				+1.7
6,042,852	-				-0.1
6,042,852	-				-0.0
6,043,361	-		Psyr_5092	0.32	+1.0
6,043,575	-		Psyr_5092	0.43	-0.5
6,043,585	+		Psyr_5092	0.44	-1.3
6,043,585	+		Psyr_5092	0.44	+0.2
6,043,585	+		Psyr_5092	0.44	+0.2
6,043,690	+		Psyr_5092	0.49	-0.1
6,043,691	-		Psyr_5092	0.49	+0.1
6,043,691	-		Psyr_5092	0.49	-0.2
6,043,760	+		Psyr_5092	0.53	+0.2
6,043,760	+		Psyr_5092	0.53	+0.2
6,043,760	+		Psyr_5092	0.53	-0.1
6,043,760	+		Psyr_5092	0.53	-0.1
6,043,760	+		Psyr_5092	0.53	+0.1
6,043,761	-		Psyr_5092	0.53	-0.1
6,043,761	-		Psyr_5092	0.53	+0.1
6,043,761	-		Psyr_5092	0.53	-2.3
6,043,761	-		Psyr_5092	0.53	-0.0
6,043,761	-		Psyr_5092	0.53	-1.0
6,043,761	-		Psyr_5092	0.53	-0.5
6,043,793	+		Psyr_5092	0.54	-0.1
6,043,793	+		Psyr_5092	0.54	+1.2
6,043,793	+		Psyr_5092	0.54	-0.1
6,043,793	+		Psyr_5092	0.54	-0.1
6,043,793	+		Psyr_5092	0.54	-0.2
6,043,793	+		Psyr_5092	0.54	-0.3
6,043,793	+		Psyr_5092	0.54	+0.8
6,043,794	-		Psyr_5092	0.54	-0.1
6,043,794	-		Psyr_5092	0.54	-0.1
6,043,794	-		Psyr_5092	0.54	-0.8
6,043,794	-		Psyr_5092	0.54	-1.5
6,043,794	-		Psyr_5092	0.54	+0.7
6,043,794	-		Psyr_5092	0.54	-0.2
6,043,794	-		Psyr_5092	0.54	+0.2
6,043,959	+		Psyr_5092	0.63	-0.9
6,043,960	-		Psyr_5092	0.63	-0.5
6,043,960	-		Psyr_5092	0.63	-0.1
6,043,960	-		Psyr_5092	0.63	-0.2
6,043,967	+		Psyr_5092	0.63	+0.3
6,044,104	-		Psyr_5092	0.71	-0.2
6,044,119	-		Psyr_5092	0.71	-1.0
6,044,195	+		Psyr_5092	0.75	+0.4
6,044,195	+		Psyr_5092	0.75	+0.1
6,044,195	+		Psyr_5092	0.75	-0.5
6,044,195	+		Psyr_5092	0.75	-1.4
6,044,195	+		Psyr_5092	0.75	-0.8
6,044,195	+		Psyr_5092	0.75	+0.1
6,044,195	+		Psyr_5092	0.75	+0.1
6,044,195	+		Psyr_5092	0.75	-1.1
6,044,195	+		Psyr_5092	0.75	-1.0
6,044,196	-		Psyr_5092	0.75	-0.1
6,044,196	-		Psyr_5092	0.75	-0.6
6,044,196	-		Psyr_5092	0.75	+0.1
6,044,196	-		Psyr_5092	0.75	-0.5
6,044,196	-		Psyr_5092	0.75	+0.2
6,044,289	+		Psyr_5092	0.80	+0.7
6,044,290	-		Psyr_5092	0.80	-0.6
6,044,322	+		Psyr_5092	0.82	-0.0
6,044,323	-		Psyr_5092	0.82	-1.1
6,044,472	+		Psyr_5092	0.90	-0.0
6,044,472	+		Psyr_5092	0.90	-0.0
6,044,472	+		Psyr_5092	0.90	+0.4
6,044,472	+		Psyr_5092	0.90	-0.4
6,044,472	+		Psyr_5092	0.90	-1.8
6,044,472	+		Psyr_5092	0.90	+0.3
6,044,472	+		Psyr_5092	0.90	+0.0
6,044,472	+		Psyr_5092	0.90	-0.3
6,044,473	-		Psyr_5092	0.90	-0.6
6,044,473	-		Psyr_5092	0.90	+0.9
6,044,473	-		Psyr_5092	0.90	+0.3
6,044,473	-		Psyr_5092	0.90	-0.0
6,044,473	-		Psyr_5092	0.90	+0.4
6,044,473	-		Psyr_5092	0.90	-1.0
6,044,473	-		Psyr_5092	0.90	+0.6
6,044,473	-		Psyr_5092	0.90	-0.5
6,044,524	+				+0.2
6,044,548	-				-0.3
6,044,548	-				+0.1
6,044,668	+				+0.0
6,044,669	-				-0.4
6,044,723	+				+0.5
6,045,056	+		Psyr_5093	0.10	-0.3
6,045,479	+		Psyr_5093	0.31	-0.8
6,045,491	+		Psyr_5093	0.32	-0.2
6,045,492	-		Psyr_5093	0.32	-0.0
6,045,492	-		Psyr_5093	0.32	+0.8
6,045,654	+		Psyr_5093	0.40	-0.6
6,045,654	+		Psyr_5093	0.40	+0.5
6,045,654	+		Psyr_5093	0.40	-0.1
6,045,654	+		Psyr_5093	0.40	+0.5
6,045,654	+		Psyr_5093	0.40	+0.2
6,045,654	+		Psyr_5093	0.40	-0.0
6,045,654	+		Psyr_5093	0.40	+0.2
6,045,654	+		Psyr_5093	0.40	+2.3
6,045,654	+		Psyr_5093	0.40	+0.2
6,045,655	-		Psyr_5093	0.40	-0.4
6,045,655	-		Psyr_5093	0.40	+0.2
6,045,655	-		Psyr_5093	0.40	-0.1
6,045,655	-		Psyr_5093	0.40	-0.2