Experiment: library passed through aphids in food, 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4703 and Psyr_4704 are separated by 25 nucleotides Psyr_4704 and Psyr_4705 overlap by 4 nucleotides Psyr_4705 and Psyr_4706 are separated by 411 nucleotides Psyr_4706 and Psyr_4707 are separated by 409 nucleotides Psyr_4707 and Psyr_4708 are separated by 126 nucleotides
Psyr_4703: Psyr_4703 - Exonuclease, at 5,573,947 to 5,574,660
_4703
Psyr_4704: Psyr_4704 - conserved hypothetical protein, at 5,574,686 to 5,574,988
_4704
Psyr_4705: Psyr_4705 - conserved hypothetical protein, at 5,574,985 to 5,575,218
_4705
Psyr_4706: Psyr_4706 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 5,575,630 to 5,577,255
_4706
Psyr_4707: Psyr_4707 - Protein of unknown function DUF1568, at 5,577,665 to 5,578,123
_4707
Psyr_4708: Psyr_4708 - transcriptional regulator, AraC family with amidase-like domain protein, at 5,578,250 to 5,579,353
_4708
Position (kb) 5575
5576
5577
5578 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5574.846 kb on + strand, within Psyr_4704 at 5575.277 kb on - strand at 5575.321 kb on + strand at 5575.321 kb on + strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.349 kb on - strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.518 kb on + strand at 5575.519 kb on - strand at 5575.542 kb on + strand at 5575.542 kb on + strand at 5575.543 kb on - strand at 5575.579 kb on - strand at 5575.579 kb on - strand at 5575.590 kb on + strand at 5575.590 kb on + strand at 5575.591 kb on - strand at 5575.608 kb on + strand at 5575.608 kb on + strand at 5575.608 kb on + strand at 5575.609 kb on - strand at 5575.609 kb on - strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.644 kb on + strand at 5575.645 kb on - strand at 5575.645 kb on - strand at 5575.645 kb on - strand at 5575.645 kb on - strand at 5575.838 kb on - strand, within Psyr_4706 at 5575.972 kb on + strand, within Psyr_4706 at 5575.972 kb on + strand, within Psyr_4706 at 5575.972 kb on + strand, within Psyr_4706 at 5575.972 kb on + strand, within Psyr_4706 at 5575.973 kb on - strand, within Psyr_4706 at 5575.974 kb on + strand, within Psyr_4706 at 5575.981 kb on + strand, within Psyr_4706 at 5575.982 kb on - strand, within Psyr_4706 at 5575.982 kb on - strand, within Psyr_4706 at 5575.982 kb on - strand, within Psyr_4706 at 5576.412 kb on + strand, within Psyr_4706 at 5576.424 kb on + strand, within Psyr_4706 at 5576.522 kb on + strand, within Psyr_4706 at 5576.522 kb on + strand, within Psyr_4706 at 5576.522 kb on + strand, within Psyr_4706 at 5576.523 kb on - strand, within Psyr_4706 at 5576.523 kb on - strand, within Psyr_4706 at 5576.523 kb on - strand, within Psyr_4706 at 5577.030 kb on + strand, within Psyr_4706 at 5577.030 kb on + strand, within Psyr_4706 at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.329 kb on + strand at 5577.330 kb on - strand at 5577.383 kb on - strand at 5577.466 kb on - strand at 5577.631 kb on - strand at 5577.676 kb on + strand at 5577.676 kb on + strand at 5577.677 kb on - strand at 5577.677 kb on - strand at 5577.725 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.743 kb on - strand, within Psyr_4707 at 5577.743 kb on - strand, within Psyr_4707 at 5577.744 kb on + strand, within Psyr_4707 at 5577.745 kb on - strand, within Psyr_4707 at 5577.863 kb on + strand, within Psyr_4707 at 5577.863 kb on + strand, within Psyr_4707 at 5577.863 kb on + strand, within Psyr_4707 at 5577.864 kb on - strand, within Psyr_4707 at 5577.947 kb on - strand, within Psyr_4707 at 5578.028 kb on + strand, within Psyr_4707 at 5578.028 kb on + strand, within Psyr_4707 at 5578.028 kb on + strand, within Psyr_4707 at 5578.028 kb on + strand, within Psyr_4707 at 5578.029 kb on - strand, within Psyr_4707 at 5578.029 kb on - strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.081 kb on - strand at 5578.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours remove 5,574,846 + Psyr_4704 0.53 +0.1 5,575,277 - +0.4 5,575,321 + -2.2 5,575,321 + +0.5 5,575,322 - -0.4 5,575,322 - -1.0 5,575,322 - +0.3 5,575,322 - +0.5 5,575,322 - -0.1 5,575,349 - +0.8 5,575,504 + -0.4 5,575,504 + +0.5 5,575,504 + +0.2 5,575,504 + -0.1 5,575,504 + +0.0 5,575,518 + +0.4 5,575,519 - +0.0 5,575,542 + +0.1 5,575,542 + -1.0 5,575,543 - +0.4 5,575,579 - +0.3 5,575,579 - -0.0 5,575,590 + -0.2 5,575,590 + -0.2 5,575,591 - +0.6 5,575,608 + -0.5 5,575,608 + -0.7 5,575,608 + -0.3 5,575,609 - +0.3 5,575,609 - -0.4 5,575,629 + +0.8 5,575,629 + -0.5 5,575,629 + -1.2 5,575,629 + -1.0 5,575,629 + -0.9 5,575,629 + -0.2 5,575,629 + -0.1 5,575,630 - -0.7 5,575,630 - -0.5 5,575,630 - -0.1 5,575,630 - -0.1 5,575,630 - -0.3 5,575,630 - -0.9 5,575,644 + +0.3 5,575,645 - +0.8 5,575,645 - -1.2 5,575,645 - +0.2 5,575,645 - +0.1 5,575,838 - Psyr_4706 0.13 +0.0 5,575,972 + Psyr_4706 0.21 +0.2 5,575,972 + Psyr_4706 0.21 +0.1 5,575,972 + Psyr_4706 0.21 -3.1 5,575,972 + Psyr_4706 0.21 +0.1 5,575,973 - Psyr_4706 0.21 +0.6 5,575,974 + Psyr_4706 0.21 -1.5 5,575,981 + Psyr_4706 0.22 -0.3 5,575,982 - Psyr_4706 0.22 +0.2 5,575,982 - Psyr_4706 0.22 -0.3 5,575,982 - Psyr_4706 0.22 -1.2 5,576,412 + Psyr_4706 0.48 -0.3 5,576,424 + Psyr_4706 0.49 +0.2 5,576,522 + Psyr_4706 0.55 -0.9 5,576,522 + Psyr_4706 0.55 -0.3 5,576,522 + Psyr_4706 0.55 -0.1 5,576,523 - Psyr_4706 0.55 +1.5 5,576,523 - Psyr_4706 0.55 +0.1 5,576,523 - Psyr_4706 0.55 -0.5 5,577,030 + Psyr_4706 0.86 +0.6 5,577,030 + Psyr_4706 0.86 -1.3 5,577,288 + -0.4 5,577,288 + -0.6 5,577,288 + -0.2 5,577,288 + +0.1 5,577,288 + +0.9 5,577,288 + +0.7 5,577,288 + +0.4 5,577,288 + +0.5 5,577,288 + +0.0 5,577,288 + +0.4 5,577,288 + +0.3 5,577,288 + +0.1 5,577,288 + +0.5 5,577,288 + +0.2 5,577,288 + +0.0 5,577,288 + -0.7 5,577,288 + -0.3 5,577,288 + -0.6 5,577,288 + +0.5 5,577,288 + -0.3 5,577,288 + +0.3 5,577,288 + -0.1 5,577,288 + -0.8 5,577,289 - +0.3 5,577,289 - -0.4 5,577,289 - -0.1 5,577,289 - +0.3 5,577,289 - +0.9 5,577,289 - +0.3 5,577,289 - -0.1 5,577,289 - -0.3 5,577,289 - -0.1 5,577,329 + +0.4 5,577,330 - +0.4 5,577,383 - -1.6 5,577,466 - -0.3 5,577,631 - -0.4 5,577,676 + -1.0 5,577,676 + -0.2 5,577,677 - -0.3 5,577,677 - +0.5 5,577,725 + Psyr_4707 0.13 -0.3 5,577,742 + Psyr_4707 0.17 -0.0 5,577,742 + Psyr_4707 0.17 -0.4 5,577,742 + Psyr_4707 0.17 +0.3 5,577,742 + Psyr_4707 0.17 -0.3 5,577,742 + Psyr_4707 0.17 -1.4 5,577,742 + Psyr_4707 0.17 +0.2 5,577,743 - Psyr_4707 0.17 +0.0 5,577,743 - Psyr_4707 0.17 +0.2 5,577,744 + Psyr_4707 0.17 -0.6 5,577,745 - Psyr_4707 0.17 -0.3 5,577,863 + Psyr_4707 0.43 -0.6 5,577,863 + Psyr_4707 0.43 +0.0 5,577,863 + Psyr_4707 0.43 -0.4 5,577,864 - Psyr_4707 0.43 +0.9 5,577,947 - Psyr_4707 0.61 +0.5 5,578,028 + Psyr_4707 0.79 +0.3 5,578,028 + Psyr_4707 0.79 +0.3 5,578,028 + Psyr_4707 0.79 +0.5 5,578,028 + Psyr_4707 0.79 -0.1 5,578,029 - Psyr_4707 0.79 -0.8 5,578,029 - Psyr_4707 0.79 +0.3 5,578,059 + Psyr_4707 0.86 -0.0 5,578,059 + Psyr_4707 0.86 -0.6 5,578,059 + Psyr_4707 0.86 +0.4 5,578,059 + Psyr_4707 0.86 -0.2 5,578,059 + Psyr_4707 0.86 -0.6 5,578,059 + Psyr_4707 0.86 +0.2 5,578,059 + Psyr_4707 0.86 -1.1 5,578,059 + Psyr_4707 0.86 +0.1 5,578,060 - Psyr_4707 0.86 +0.6 5,578,060 - Psyr_4707 0.86 +0.4 5,578,060 - Psyr_4707 0.86 -1.0 5,578,060 - Psyr_4707 0.86 -0.4 5,578,060 - Psyr_4707 0.86 -3.5 5,578,060 - Psyr_4707 0.86 +0.5 5,578,060 - Psyr_4707 0.86 -0.2 5,578,060 - Psyr_4707 0.86 -0.5 5,578,060 - Psyr_4707 0.86 +0.5 5,578,081 - -0.8 5,578,170 - -0.8
Or see this region's nucleotide sequence