Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4238

Experiment: library passed through aphids in food, 24 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 24 hours
5,049,040	-		Psyr_4237	0.40	-0.1
5,049,059	-		Psyr_4237	0.42	-0.1
5,049,080	-		Psyr_4237	0.43	-1.2
5,049,103	+		Psyr_4237	0.45	+0.1
5,049,103	+		Psyr_4237	0.45	+1.0
5,049,103	+		Psyr_4237	0.45	-1.2
5,049,103	+		Psyr_4237	0.45	-0.8
5,049,103	+		Psyr_4237	0.45	-0.9
5,049,103	+		Psyr_4237	0.45	+1.2
5,049,104	-		Psyr_4237	0.45	-0.4
5,049,104	-		Psyr_4237	0.45	-0.4
5,049,104	-		Psyr_4237	0.45	+0.2
5,049,104	-		Psyr_4237	0.45	-0.3
5,049,104	-		Psyr_4237	0.45	-0.8
5,049,188	+		Psyr_4237	0.51	-0.1
5,049,188	+		Psyr_4237	0.51	-0.5
5,049,188	+		Psyr_4237	0.51	+0.7
5,049,188	+		Psyr_4237	0.51	-0.4
5,049,189	-		Psyr_4237	0.51	-0.2
5,049,189	-		Psyr_4237	0.51	-0.4
5,049,221	+		Psyr_4237	0.53	+0.6
5,049,222	-		Psyr_4237	0.53	+0.6
5,049,254	+		Psyr_4237	0.56	+0.1
5,049,254	+		Psyr_4237	0.56	-0.4
5,049,254	+		Psyr_4237	0.56	+0.8
5,049,255	-		Psyr_4237	0.56	-2.2
5,049,258	-		Psyr_4237	0.56	-0.2
5,049,258	-		Psyr_4237	0.56	-0.2
5,049,258	-		Psyr_4237	0.56	-0.1
5,049,320	+		Psyr_4237	0.60	-0.2
5,049,320	+		Psyr_4237	0.60	+0.6
5,049,320	+		Psyr_4237	0.60	-1.7
5,049,320	+		Psyr_4237	0.60	-0.4
5,049,321	-		Psyr_4237	0.60	+0.1
5,049,321	-		Psyr_4237	0.60	+0.3
5,049,321	-		Psyr_4237	0.60	-1.0
5,049,321	-		Psyr_4237	0.60	+0.1
5,049,321	-		Psyr_4237	0.60	-0.5
5,049,321	-		Psyr_4237	0.60	-0.2
5,049,323	+		Psyr_4237	0.60	+0.8
5,049,323	+		Psyr_4237	0.60	-1.7
5,049,324	-		Psyr_4237	0.60	+0.1
5,049,324	-		Psyr_4237	0.60	+0.4
5,049,324	-		Psyr_4237	0.60	-0.7
5,049,324	-		Psyr_4237	0.60	+0.3
5,049,373	+		Psyr_4237	0.64	+0.2
5,049,373	+		Psyr_4237	0.64	+0.5
5,049,373	+		Psyr_4237	0.64	+0.0
5,049,373	+		Psyr_4237	0.64	-0.5
5,049,377	+		Psyr_4237	0.64	-0.4
5,049,377	+		Psyr_4237	0.64	-0.6
5,049,377	+		Psyr_4237	0.64	-0.6
5,049,377	+		Psyr_4237	0.64	+0.6
5,049,377	+		Psyr_4237	0.64	-0.6
5,049,378	-		Psyr_4237	0.64	-0.1
5,049,378	-		Psyr_4237	0.64	-0.8
5,049,378	-		Psyr_4237	0.64	-0.5
5,049,378	-		Psyr_4237	0.64	-0.3
5,049,378	-		Psyr_4237	0.64	-0.9
5,049,378	-		Psyr_4237	0.64	-2.0
5,049,378	-		Psyr_4237	0.64	+0.5
5,049,438	+		Psyr_4237	0.69	+0.1
5,049,438	+		Psyr_4237	0.69	-0.8
5,049,439	-		Psyr_4237	0.69	-0.1
5,049,439	-		Psyr_4237	0.69	-0.2
5,049,439	-		Psyr_4237	0.69	+0.2
5,049,439	-		Psyr_4237	0.69	-0.3
5,049,439	-		Psyr_4237	0.69	+3.3
5,049,439	-		Psyr_4237	0.69	-0.2
5,049,439	-		Psyr_4237	0.69	-0.7
5,049,452	+		Psyr_4237	0.69	-0.3
5,049,452	+		Psyr_4237	0.69	-0.1
5,049,452	+		Psyr_4237	0.69	+0.1
5,049,452	+		Psyr_4237	0.69	+1.0
5,049,453	-		Psyr_4237	0.70	-0.4
5,049,453	-		Psyr_4237	0.70	+0.2
5,049,461	+		Psyr_4237	0.70	-0.9
5,049,548	+		Psyr_4237	0.76	-1.0
5,049,548	+		Psyr_4237	0.76	+0.5
5,049,552	+		Psyr_4237	0.77	+0.6
5,049,553	-		Psyr_4237	0.77	+0.9
5,049,553	-		Psyr_4237	0.77	+0.5
5,049,599	+		Psyr_4237	0.80	-0.9
5,049,599	+		Psyr_4237	0.80	-0.9
5,049,600	-		Psyr_4237	0.80	-0.5
5,049,600	-		Psyr_4237	0.80	-0.1
5,049,635	+		Psyr_4237	0.82	+0.3
5,049,635	+		Psyr_4237	0.82	-1.6
5,049,635	+		Psyr_4237	0.82	-1.3
5,049,682	+		Psyr_4237	0.86	-0.9
5,049,682	+		Psyr_4237	0.86	+0.8
5,049,683	-		Psyr_4237	0.86	-0.3
5,049,696	+		Psyr_4237	0.87	+0.6
5,049,722	+		Psyr_4237	0.89	+0.6
5,049,723	-		Psyr_4237	0.89	+0.8
5,049,723	-		Psyr_4237	0.89	+1.0
5,049,723	-		Psyr_4237	0.89	-0.7
5,049,728	+		Psyr_4237	0.89	-2.2
5,049,728	+		Psyr_4237	0.89	-1.0
5,049,746	+				+0.7
5,049,794	+				-1.0
5,049,795	-				-0.6
5,049,795	-				-0.0
5,049,795	-				+0.3
5,049,795	-				+0.4
5,049,795	-				+0.6
5,049,795	-				-1.5
5,049,948	+				+0.0
5,049,948	+				+1.0
5,049,948	+				+1.2
5,049,949	-				-1.6
5,050,073	+				+0.3
5,050,073	+				-1.6
5,050,073	+				+0.3
5,050,128	+		Psyr_4238	0.11	-0.8
5,050,153	+		Psyr_4238	0.13	+0.2
5,050,205	+		Psyr_4238	0.16	-1.8
5,050,206	-		Psyr_4238	0.16	+0.8
5,050,206	-		Psyr_4238	0.16	+0.6
5,050,206	-		Psyr_4238	0.16	-0.1
5,050,206	-		Psyr_4238	0.16	+0.9
5,050,250	+		Psyr_4238	0.19	-0.6
5,050,358	+		Psyr_4238	0.26	+0.3
5,050,358	+		Psyr_4238	0.26	-0.3
5,050,491	-		Psyr_4238	0.34	+0.1
5,050,491	-		Psyr_4238	0.34	-0.4
5,050,502	+		Psyr_4238	0.35	+0.9
5,050,612	+		Psyr_4238	0.41	+0.9
5,050,612	+		Psyr_4238	0.41	+0.2
5,050,612	+		Psyr_4238	0.41	+0.8
5,050,612	+		Psyr_4238	0.41	+0.4
5,050,613	-		Psyr_4238	0.42	+0.5
5,050,733	+		Psyr_4238	0.49	+0.3
5,050,751	-		Psyr_4238	0.50	+0.5
5,050,751	-		Psyr_4238	0.50	-1.0
5,050,751	-		Psyr_4238	0.50	+0.1
5,050,814	+		Psyr_4238	0.54	+0.2
5,050,814	+		Psyr_4238	0.54	+0.5
5,050,814	+		Psyr_4238	0.54	+0.6
5,050,815	-		Psyr_4238	0.54	+0.1
5,050,815	-		Psyr_4238	0.54	+0.9
5,050,815	-		Psyr_4238	0.54	-0.0
5,050,842	-		Psyr_4238	0.56	-0.5
5,050,842	-		Psyr_4238	0.56	-1.2
5,050,842	-		Psyr_4238	0.56	+2.3
5,050,842	-		Psyr_4238	0.56	-0.1
5,050,842	-		Psyr_4238	0.56	+1.1
5,050,842	-		Psyr_4238	0.56	+0.1
5,050,842	-		Psyr_4238	0.56	-0.8
5,050,899	-		Psyr_4238	0.59	+0.6
5,050,899	-		Psyr_4238	0.59	+0.3
5,050,899	-		Psyr_4238	0.59	-0.1
5,050,941	+		Psyr_4238	0.62	+0.4
5,050,942	-		Psyr_4238	0.62	-0.7
5,050,942	-		Psyr_4238	0.62	-0.0
5,050,942	-		Psyr_4238	0.62	+0.0
5,051,040	+		Psyr_4238	0.68	-1.8
5,051,055	+		Psyr_4238	0.69	-0.2
5,051,055	+		Psyr_4238	0.69	-0.3
5,051,055	+		Psyr_4238	0.69	-0.3
5,051,055	+		Psyr_4238	0.69	-0.2
5,051,056	-		Psyr_4238	0.69	+0.6
5,051,056	-		Psyr_4238	0.69	+0.8
5,051,110	-		Psyr_4238	0.73	-0.1
5,051,157	+		Psyr_4238	0.76	+0.1
5,051,157	+		Psyr_4238	0.76	+0.9
5,051,157	+		Psyr_4238	0.76	+0.9
5,051,157	+		Psyr_4238	0.76	-0.9
5,051,158	-		Psyr_4238	0.76	+0.8
5,051,312	+		Psyr_4238	0.85	+0.3
5,051,312	+		Psyr_4238	0.85	-0.2
5,051,312	+		Psyr_4238	0.85	+0.1
5,051,313	-		Psyr_4238	0.85	-0.5
5,051,313	-		Psyr_4238	0.85	-0.1
5,051,313	-		Psyr_4238	0.85	-0.4
5,051,313	-		Psyr_4238	0.85	-0.6
5,051,396	+				+0.1
5,051,396	+				-0.6
5,051,396	+				-0.6
5,051,397	-				+0.4
5,051,397	-				+0.1
5,051,397	-				+0.8
5,051,397	-				+0.1
5,051,397	-				+0.3
5,051,397	-				+1.3
5,051,397	-				+1.1
5,051,397	-				+0.0
5,051,398	+				+0.0
5,051,398	+				+0.2
5,051,399	-				+0.0
5,051,399	-				+0.9
5,051,399	-				-0.6
5,051,399	-				+0.2
5,051,399	-				-0.3
5,051,399	-				-0.6
5,051,543	+				-0.9
5,051,609	+				+0.7
5,051,609	+				+0.3
5,051,609	+				-0.4
5,051,609	+				+0.0
5,051,609	+				+0.0
5,051,609	+				+0.3
5,051,609	+				-0.0
5,051,609	+				+0.0
5,051,609	+				-0.4
5,051,610	-				-0.7
5,051,610	-				+0.4
5,051,610	-				+1.1
5,051,610	-				-0.0
5,051,610	-				-0.5
5,051,610	-				-0.3
5,051,625	+				+0.5
5,051,625	+				+0.0
5,051,625	+				-0.1
5,051,625	+				+0.5
5,051,626	-				-0.0
5,051,631	+				-0.1
5,051,681	+				+0.1
5,051,682	-				+0.5
5,051,806	+		Psyr_4239	0.18	-0.6
5,051,806	+		Psyr_4239	0.18	-0.3
5,051,815	+		Psyr_4239	0.19	+0.4
5,051,815	+		Psyr_4239	0.19	+1.0
5,051,815	+		Psyr_4239	0.19	-0.1
5,051,815	+		Psyr_4239	0.19	+1.2
5,051,816	-		Psyr_4239	0.19	-0.2
5,051,816	-		Psyr_4239	0.19	+0.0
5,051,816	-		Psyr_4239	0.19	-0.3
5,051,824	+		Psyr_4239	0.20	-0.5
5,051,824	+		Psyr_4239	0.20	-0.5
5,051,825	-		Psyr_4239	0.20	+1.8
5,051,825	-		Psyr_4239	0.20	+0.1
5,051,825	-		Psyr_4239	0.20	+2.0
5,052,040	+		Psyr_4239	0.42	-0.2
5,052,137	-		Psyr_4239	0.51	+2.0
5,052,137	-		Psyr_4239	0.51	-0.6
5,052,137	-		Psyr_4239	0.51	+0.4
5,052,137	-		Psyr_4239	0.51	-0.4
5,052,243	-		Psyr_4239	0.62	+0.3
5,052,316	+		Psyr_4239	0.69	+0.1
5,052,316	+		Psyr_4239	0.69	-0.5
5,052,316	+		Psyr_4239	0.69	+0.0
5,052,317	-		Psyr_4239	0.69	-0.3
5,052,317	-		Psyr_4239	0.69	-0.3
5,052,317	-		Psyr_4239	0.69	+0.4
5,052,317	-		Psyr_4239	0.69	+1.2
5,052,317	-		Psyr_4239	0.69	-0.6
5,052,317	-		Psyr_4239	0.69	-0.7
5,052,317	-		Psyr_4239	0.69	+0.1
5,052,363	-		Psyr_4239	0.73	+0.6
5,052,363	-		Psyr_4239	0.73	-0.7