Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2215

Experiment: library passed through aphids in food, 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2214 and Psyr_2215 overlap by 4 nucleotidesPsyr_2215 and Psyr_2216 are separated by 64 nucleotidesPsyr_2216 and Psyr_2217 are separated by 87 nucleotidesPsyr_2217 and Psyr_2218 are separated by 123 nucleotides Psyr_2214: Psyr_2214 - PAS, at 2,573,305 to 2,575,437 _2214 Psyr_2215: Psyr_2215 - CheW-like protein, at 2,575,434 to 2,576,912 _2215 Psyr_2216: Psyr_2216 - conserved hypothetical protein, at 2,576,977 to 2,577,102 _2216 Psyr_2217: Psyr_2217 - conserved hypothetical protein, at 2,577,190 to 2,577,588 _2217 Psyr_2218: Psyr_2218 - Beta-lactamase-like protein, at 2,577,712 to 2,578,587 _2218 Position (kb) 2575 2576 2577Strain fitness (log2 ratio) -1 0 1at 2574.597 kb on + strand, within Psyr_2214at 2574.616 kb on + strand, within Psyr_2214at 2574.616 kb on + strand, within Psyr_2214at 2574.616 kb on + strand, within Psyr_2214at 2574.616 kb on + strand, within Psyr_2214at 2574.616 kb on + strand, within Psyr_2214at 2574.617 kb on - strand, within Psyr_2214at 2574.617 kb on - strand, within Psyr_2214at 2574.617 kb on - strand, within Psyr_2214at 2574.617 kb on - strand, within Psyr_2214at 2574.674 kb on - strand, within Psyr_2214at 2574.703 kb on + strand, within Psyr_2214at 2574.703 kb on + strand, within Psyr_2214at 2574.734 kb on - strand, within Psyr_2214at 2574.734 kb on - strand, within Psyr_2214at 2574.792 kb on + strand, within Psyr_2214at 2574.793 kb on - strand, within Psyr_2214at 2574.883 kb on + strand, within Psyr_2214at 2574.883 kb on + strand, within Psyr_2214at 2575.312 kb on - strandat 2575.375 kb on - strandat 2575.393 kb on + strandat 2575.415 kb on + strandat 2575.415 kb on + strandat 2575.480 kb on - strandat 2575.577 kb on + strandat 2575.577 kb on + strandat 2575.677 kb on + strand, within Psyr_2215at 2575.677 kb on + strand, within Psyr_2215at 2575.677 kb on + strand, within Psyr_2215at 2575.689 kb on + strand, within Psyr_2215at 2575.827 kb on + strand, within Psyr_2215at 2575.828 kb on - strand, within Psyr_2215at 2575.828 kb on - strand, within Psyr_2215at 2575.828 kb on - strand, within Psyr_2215at 2575.828 kb on - strand, within Psyr_2215at 2575.828 kb on - strand, within Psyr_2215at 2575.867 kb on + strand, within Psyr_2215at 2575.867 kb on + strand, within Psyr_2215at 2575.868 kb on - strand, within Psyr_2215at 2575.868 kb on - strand, within Psyr_2215at 2575.942 kb on - strand, within Psyr_2215at 2575.942 kb on - strand, within Psyr_2215at 2575.942 kb on - strand, within Psyr_2215at 2576.364 kb on + strand, within Psyr_2215at 2576.376 kb on + strand, within Psyr_2215at 2576.945 kb on + strandat 2576.946 kb on - strandat 2577.625 kb on + strandat 2577.625 kb on + strandat 2577.625 kb on + strandat 2577.625 kb on + strandat 2577.626 kb on - strandat 2577.626 kb on - strandat 2577.637 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours
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2,574,597 + Psyr_2214 0.61 -0.2
2,574,616 + Psyr_2214 0.61 +0.1
2,574,616 + Psyr_2214 0.61 -1.0
2,574,616 + Psyr_2214 0.61 +0.5
2,574,616 + Psyr_2214 0.61 -0.4
2,574,616 + Psyr_2214 0.61 +0.6
2,574,617 - Psyr_2214 0.62 +0.7
2,574,617 - Psyr_2214 0.62 -0.8
2,574,617 - Psyr_2214 0.62 -0.4
2,574,617 - Psyr_2214 0.62 -0.9
2,574,674 - Psyr_2214 0.64 +1.1
2,574,703 + Psyr_2214 0.66 -0.2
2,574,703 + Psyr_2214 0.66 +0.2
2,574,734 - Psyr_2214 0.67 +0.8
2,574,734 - Psyr_2214 0.67 +0.3
2,574,792 + Psyr_2214 0.70 -0.5
2,574,793 - Psyr_2214 0.70 +0.4
2,574,883 + Psyr_2214 0.74 -0.1
2,574,883 + Psyr_2214 0.74 +0.3
2,575,312 - +0.1
2,575,375 - +0.7
2,575,393 + +0.7
2,575,415 + -0.0
2,575,415 + +0.4
2,575,480 - -0.1
2,575,577 + -0.8
2,575,577 + +0.6
2,575,677 + Psyr_2215 0.16 -0.5
2,575,677 + Psyr_2215 0.16 -1.1
2,575,677 + Psyr_2215 0.16 +0.4
2,575,689 + Psyr_2215 0.17 -0.5
2,575,827 + Psyr_2215 0.27 +0.3
2,575,828 - Psyr_2215 0.27 +0.1
2,575,828 - Psyr_2215 0.27 +0.3
2,575,828 - Psyr_2215 0.27 -0.7
2,575,828 - Psyr_2215 0.27 -0.3
2,575,828 - Psyr_2215 0.27 -0.5
2,575,867 + Psyr_2215 0.29 -0.3
2,575,867 + Psyr_2215 0.29 -0.7
2,575,868 - Psyr_2215 0.29 +0.6
2,575,868 - Psyr_2215 0.29 +0.9
2,575,942 - Psyr_2215 0.34 +1.0
2,575,942 - Psyr_2215 0.34 +0.6
2,575,942 - Psyr_2215 0.34 +0.6
2,576,364 + Psyr_2215 0.63 -0.9
2,576,376 + Psyr_2215 0.64 +0.6
2,576,945 + +0.7
2,576,946 - +1.0
2,577,625 + -0.1
2,577,625 + -1.1
2,577,625 + -0.5
2,577,625 + +0.1
2,577,626 - -1.4
2,577,626 - +0.1
2,577,637 + +0.4

Or see this region's nucleotide sequence