Experiment: library passed through aphids in food, 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1632 and Psyr_1633 are separated by 42 nucleotides Psyr_1633 and Psyr_1634 overlap by 4 nucleotides Psyr_1634 and Psyr_1635 overlap by 1 nucleotides
Psyr_1632: Psyr_1632 - ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2, at 1,835,715 to 1,837,931
_1632
Psyr_1633: Psyr_1633 - MotA/TolQ/ExbB proton channel, at 1,837,974 to 1,838,690
_1633
Psyr_1634: Psyr_1634 - Biopolymer transport protein ExbD/TolR, at 1,838,687 to 1,839,118
_1634
Psyr_1635: Psyr_1635 - lipid-A-disaccharide kinase, at 1,839,118 to 1,840,113
_1635
Position (kb)
1837
1838
1839 Strain fitness (log2 ratio)
-1
0
1 at 1836.998 kb on - strand, within Psyr_1632 at 1837.260 kb on + strand, within Psyr_1632 at 1837.260 kb on + strand, within Psyr_1632 at 1837.260 kb on + strand, within Psyr_1632 at 1837.260 kb on + strand, within Psyr_1632 at 1837.261 kb on - strand, within Psyr_1632 at 1837.261 kb on - strand, within Psyr_1632 at 1837.704 kb on - strand, within Psyr_1632 at 1837.704 kb on - strand, within Psyr_1632 at 1837.836 kb on + strand at 1837.836 kb on + strand at 1837.837 kb on - strand at 1837.941 kb on + strand at 1837.973 kb on + strand at 1837.973 kb on + strand at 1837.978 kb on + strand at 1837.978 kb on + strand at 1838.328 kb on + strand, within Psyr_1633 at 1838.328 kb on + strand, within Psyr_1633
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours remove 1,836,998 - Psyr_1632 0.58 -0.2 1,837,260 + Psyr_1632 0.70 -0.6 1,837,260 + Psyr_1632 0.70 +0.0 1,837,260 + Psyr_1632 0.70 +0.1 1,837,260 + Psyr_1632 0.70 -0.3 1,837,261 - Psyr_1632 0.70 -0.4 1,837,261 - Psyr_1632 0.70 +0.6 1,837,704 - Psyr_1632 0.90 +0.4 1,837,704 - Psyr_1632 0.90 +0.0 1,837,836 + -0.4 1,837,836 + -0.0 1,837,837 - -1.4 1,837,941 + -0.2 1,837,973 + +0.6 1,837,973 + -0.3 1,837,978 + +0.3 1,837,978 + -1.3 1,838,328 + Psyr_1633 0.49 -0.9 1,838,328 + Psyr_1633 0.49 -0.5
Or see this region's nucleotide sequence