Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0905

Experiment: library passed through aphids in food, 24 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 24 hours
1,023,679	+				-0.2
1,023,680	-				-0.1
1,023,746	-				+1.5
1,023,768	+				+0.6
1,024,145	+		Psyr_0904	0.40	+1.5
1,024,145	+		Psyr_0904	0.40	+0.4
1,024,145	-		Psyr_0904	0.40	-0.1
1,024,146	-		Psyr_0904	0.40	-0.1
1,024,146	-		Psyr_0904	0.40	+1.5
1,024,192	+		Psyr_0904	0.46	-0.3
1,024,192	+		Psyr_0904	0.46	+1.3
1,024,192	+		Psyr_0904	0.46	-0.1
1,024,192	+		Psyr_0904	0.46	-0.1
1,024,192	+		Psyr_0904	0.46	+0.3
1,024,192	+		Psyr_0904	0.46	+1.0
1,024,193	-		Psyr_0904	0.46	-1.2
1,024,193	-		Psyr_0904	0.46	-0.6
1,024,193	-		Psyr_0904	0.46	-0.2
1,024,294	+		Psyr_0904	0.59	+0.0
1,024,294	+		Psyr_0904	0.59	-0.1
1,024,294	+		Psyr_0904	0.59	-1.0
1,024,294	+		Psyr_0904	0.59	+0.5
1,024,295	-		Psyr_0904	0.59	+0.2
1,024,295	-		Psyr_0904	0.59	-0.3
1,024,295	-		Psyr_0904	0.59	+0.4
1,024,295	-		Psyr_0904	0.59	-0.1
1,024,295	-		Psyr_0904	0.59	-0.7
1,024,295	-		Psyr_0904	0.59	+0.0
1,024,296	+		Psyr_0904	0.59	+0.2
1,024,296	+		Psyr_0904	0.59	-1.0
1,024,905	+		Psyr_0905	0.12	-0.0
1,024,905	+		Psyr_0905	0.12	+0.1
1,024,906	-		Psyr_0905	0.12	+0.2
1,024,906	-		Psyr_0905	0.12	-0.2
1,025,037	+		Psyr_0905	0.19	-1.2
1,025,037	+		Psyr_0905	0.19	+1.5
1,025,038	-		Psyr_0905	0.19	-0.6
1,025,038	-		Psyr_0905	0.19	-0.1
1,025,038	-		Psyr_0905	0.19	-0.2
1,025,038	-		Psyr_0905	0.19	+0.0
1,025,038	-		Psyr_0905	0.19	-0.4
1,025,038	-		Psyr_0905	0.19	-0.3
1,025,613	+		Psyr_0905	0.49	-0.1
1,025,652	+		Psyr_0905	0.51	+0.2
1,025,728	-		Psyr_0905	0.55	+0.8
1,025,774	+		Psyr_0905	0.57	+0.4
1,025,774	+		Psyr_0905	0.57	+0.3
1,025,774	+		Psyr_0905	0.57	+0.5
1,025,774	+		Psyr_0905	0.57	+1.7
1,025,774	+		Psyr_0905	0.57	+0.5
1,025,774	+		Psyr_0905	0.57	+0.6
1,025,774	+		Psyr_0905	0.57	-0.4
1,025,774	+		Psyr_0905	0.57	-0.7
1,025,774	+		Psyr_0905	0.57	-0.2
1,025,774	+		Psyr_0905	0.57	-1.3
1,025,774	+		Psyr_0905	0.57	-0.3
1,025,774	+		Psyr_0905	0.57	+0.4
1,025,774	+		Psyr_0905	0.57	+0.2
1,025,774	+		Psyr_0905	0.57	+1.1
1,025,774	+		Psyr_0905	0.57	-0.2
1,025,775	-		Psyr_0905	0.58	+0.3
1,025,775	-		Psyr_0905	0.58	+1.0
1,025,775	-		Psyr_0905	0.58	-0.0
1,025,775	-		Psyr_0905	0.58	-0.4
1,025,775	-		Psyr_0905	0.58	+0.3
1,025,775	-		Psyr_0905	0.58	-0.1
1,025,775	-		Psyr_0905	0.58	+0.5
1,025,775	-		Psyr_0905	0.58	+0.3
1,025,775	-		Psyr_0905	0.58	-0.2
1,025,775	-		Psyr_0905	0.58	-0.1
1,025,775	-		Psyr_0905	0.58	+0.1
1,025,775	-		Psyr_0905	0.58	+0.6
1,026,027	-		Psyr_0905	0.71	+0.1
1,026,042	-		Psyr_0905	0.71	-0.9
1,026,042	-		Psyr_0905	0.71	+0.6
1,026,326	+		Psyr_0905	0.86	-0.4
1,026,368	-		Psyr_0905	0.88	+0.5
1,026,395	+		Psyr_0905	0.90	-0.1
1,026,395	+		Psyr_0905	0.90	+0.8
1,026,395	+		Psyr_0905	0.90	-0.1
1,026,395	+		Psyr_0905	0.90	+0.0
1,026,395	+		Psyr_0905	0.90	-0.1
1,026,395	+		Psyr_0905	0.90	-1.1
1,026,395	+		Psyr_0905	0.90	+0.0
1,026,395	+		Psyr_0905	0.90	-0.6
1,026,395	+		Psyr_0905	0.90	+0.3
1,026,395	+		Psyr_0905	0.90	-0.6
1,026,395	+		Psyr_0905	0.90	+1.2
1,026,395	+				+0.3
1,026,396	-		Psyr_0905	0.90	+0.3
1,026,396	-		Psyr_0905	0.90	+0.2
1,026,396	-		Psyr_0905	0.90	-0.3
1,026,396	-		Psyr_0905	0.90	-0.2
1,026,396	-		Psyr_0905	0.90	-0.6
1,026,396	-		Psyr_0905	0.90	-0.7
1,026,396	-		Psyr_0905	0.90	+0.7
1,026,396	-		Psyr_0905	0.90	+0.3
1,026,396	-		Psyr_0905	0.90	-0.0
1,026,396	-		Psyr_0905	0.90	+0.3
1,026,396	-		Psyr_0905	0.90	+0.1
1,026,396	-		Psyr_0905	0.90	-0.2
1,026,396	-		Psyr_0905	0.90	+0.5
1,026,396	-		Psyr_0905	0.90	+0.1
1,026,396	-		Psyr_0905	0.90	+0.5
1,026,444	+				+0.6
1,026,444	+				-0.9
1,026,444	+				-0.5
1,026,444	+				-0.1
1,026,444	+				+0.3
1,026,444	+				+0.3
1,026,444	+				-0.3
1,026,444	+				+0.9
1,026,445	-				+0.8
1,026,445	-				-2.5
1,026,445	-				-0.9
1,026,445	-				-0.4
1,026,463	-				-0.1
1,026,463	-				-0.4
1,026,530	-				-0.7
1,026,530	-				-0.2
1,026,559	-				+0.3
1,026,585	+				+0.2
1,026,586	-				+0.1
1,026,626	-				-0.3
1,026,626	-				-0.0
1,026,626	-				-0.8
1,026,639	-				-0.7
1,026,645	+				-0.4
1,026,645	+				-0.2
1,026,645	+				+0.0
1,026,645	+				+1.2
1,026,646	-				+0.1
1,026,646	-				+0.1
1,026,667	+				-0.2
1,026,667	+				+0.4
1,026,667	+				-0.7
1,026,667	+				+0.3
1,026,667	+				+1.1
1,026,667	+				-0.1
1,026,667	+				+0.7
1,026,667	+				+0.8
1,026,668	-				-0.5
1,026,668	-				-0.1
1,026,668	-				+0.1
1,026,668	-				-1.0
1,026,668	-				-0.5
1,026,669	+				+0.1
1,026,669	+				+0.5
1,026,669	+				-0.2
1,026,669	+				-0.4
1,026,669	+				+0.7
1,026,669	+				+0.3
1,026,670	-				+0.4
1,026,670	-				-0.5
1,026,670	-				-0.9
1,026,776	+				-0.4
1,026,777	-				-0.4
1,026,778	+				+0.9
1,026,779	-				+0.4
1,026,779	-				-0.9
1,026,779	-				+0.1
1,026,779	-				+0.1
1,026,779	-				-0.4
1,026,779	-				-0.6
1,026,779	-				-0.1
1,026,804	-				-0.1
1,026,976	+				-0.5
1,026,976	+				-0.3
1,026,989	+				+0.4
1,026,990	-				+0.9
1,026,990	-				-0.0
1,027,015	+				-0.6
1,027,016	-				-0.5
1,027,047	+				+0.1
1,027,048	-				+0.2
1,027,048	-				-0.0
1,027,056	+				+0.8
1,027,067	+				-0.1
1,027,067	+				-0.5
1,027,067	+				+0.2
1,027,067	+				+0.5
1,027,068	-				-0.6
1,027,068	-				+0.2
1,027,068	-				-2.3
1,027,068	-				+0.2
1,027,186	+		Psyr_0906	0.12	+2.2
1,027,263	+		Psyr_0906	0.16	-0.2
1,027,263	+		Psyr_0906	0.16	-0.4
1,027,263	+		Psyr_0906	0.16	-0.3
1,027,263	+		Psyr_0906	0.16	-0.3
1,027,263	+		Psyr_0906	0.16	+0.2
1,027,263	+		Psyr_0906	0.16	+0.3
1,027,263	+		Psyr_0906	0.16	-0.2
1,027,263	+		Psyr_0906	0.16	+0.7
1,027,263	+		Psyr_0906	0.16	+0.0
1,027,263	+		Psyr_0906	0.16	-0.1
1,027,263	+		Psyr_0906	0.16	+0.8
1,027,263	+		Psyr_0906	0.16	-0.3
1,027,264	-		Psyr_0906	0.16	+0.1
1,027,264	-		Psyr_0906	0.16	+0.5
1,027,264	-		Psyr_0906	0.16	-0.5
1,027,264	-		Psyr_0906	0.16	+0.5
1,027,264	-		Psyr_0906	0.16	-0.4
1,027,264	-		Psyr_0906	0.16	+1.2
1,027,264	-		Psyr_0906	0.16	+0.6
1,027,264	-		Psyr_0906	0.16	+0.1
1,027,347	+		Psyr_0906	0.20	-0.3
1,027,347	+		Psyr_0906	0.20	+0.9
1,027,347	+		Psyr_0906	0.20	+0.3
1,027,347	+		Psyr_0906	0.20	-0.7
1,027,348	-		Psyr_0906	0.20	+0.0
1,027,392	+		Psyr_0906	0.22	-0.8
1,027,393	-		Psyr_0906	0.23	-0.3