Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0860

Experiment: library passed through aphids in food, 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0858 and Psyr_0859 are separated by 131 nucleotidesPsyr_0859 and Psyr_0860 are separated by 56 nucleotidesPsyr_0860 and Psyr_0861 are separated by 107 nucleotidesPsyr_0861 and Psyr_0862 are separated by 65 nucleotides Psyr_0858: Psyr_0858 - conserved hypothetical protein, at 977,681 to 978,088 _0858 Psyr_0859: Psyr_0859 - Carbonate dehydratase, at 978,220 to 978,858 _0859 Psyr_0860: Psyr_0860 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 978,915 to 980,591 _0860 Psyr_0861: Psyr_0861 - Metal-dependent phosphohydrolase, HD subdomain protein, at 980,699 to 981,358 _0861 Psyr_0862: Psyr_0862 - Acyltransferase 3, at 981,424 to 983,445 _0862 Position (kb) 978 979 980 981Strain fitness (log2 ratio) -2 -1 0 1 2at 977.962 kb on + strand, within Psyr_0858at 977.962 kb on + strand, within Psyr_0858at 977.963 kb on - strand, within Psyr_0858at 978.230 kb on + strandat 978.230 kb on + strandat 978.231 kb on - strandat 978.272 kb on + strandat 978.273 kb on - strandat 978.479 kb on + strand, within Psyr_0859at 978.479 kb on + strand, within Psyr_0859at 978.479 kb on + strand, within Psyr_0859at 978.479 kb on + strand, within Psyr_0859at 978.480 kb on - strand, within Psyr_0859at 978.480 kb on - strand, within Psyr_0859at 978.480 kb on - strand, within Psyr_0859at 978.598 kb on + strand, within Psyr_0859at 978.598 kb on + strand, within Psyr_0859at 978.598 kb on + strand, within Psyr_0859at 978.598 kb on + strand, within Psyr_0859at 978.598 kb on + strand, within Psyr_0859at 978.599 kb on - strand, within Psyr_0859at 978.599 kb on - strand, within Psyr_0859at 978.599 kb on - strand, within Psyr_0859at 978.599 kb on - strand, within Psyr_0859at 978.601 kb on + strand, within Psyr_0859at 978.763 kb on + strand, within Psyr_0859at 978.763 kb on + strand, within Psyr_0859at 978.763 kb on + strand, within Psyr_0859at 978.764 kb on - strand, within Psyr_0859at 978.764 kb on - strand, within Psyr_0859at 978.764 kb on - strand, within Psyr_0859at 978.764 kb on - strand, within Psyr_0859at 978.836 kb on - strandat 978.867 kb on + strandat 979.032 kb on - strandat 979.032 kb on - strandat 979.577 kb on + strand, within Psyr_0860at 979.741 kb on + strand, within Psyr_0860at 979.741 kb on + strand, within Psyr_0860at 979.741 kb on + strand, within Psyr_0860at 979.741 kb on + strand, within Psyr_0860at 979.742 kb on - strand, within Psyr_0860at 979.757 kb on + strand, within Psyr_0860at 979.758 kb on - strand, within Psyr_0860at 979.758 kb on - strand, within Psyr_0860at 979.797 kb on + strand, within Psyr_0860at 979.798 kb on - strand, within Psyr_0860at 979.875 kb on + strand, within Psyr_0860at 979.875 kb on + strand, within Psyr_0860at 979.876 kb on - strand, within Psyr_0860at 979.876 kb on - strand, within Psyr_0860at 979.987 kb on + strand, within Psyr_0860at 979.987 kb on + strand, within Psyr_0860at 979.988 kb on - strand, within Psyr_0860at 979.988 kb on - strand, within Psyr_0860at 979.988 kb on - strand, within Psyr_0860at 979.988 kb on - strand, within Psyr_0860at 979.988 kb on - strand, within Psyr_0860at 980.008 kb on - strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.176 kb on + strand, within Psyr_0860at 980.177 kb on - strand, within Psyr_0860at 980.177 kb on - strand, within Psyr_0860at 980.177 kb on - strand, within Psyr_0860at 980.177 kb on - strand, within Psyr_0860at 980.236 kb on + strand, within Psyr_0860at 980.237 kb on - strand, within Psyr_0860at 980.237 kb on - strand, within Psyr_0860at 980.461 kb on - strandat 980.490 kb on + strandat 980.490 kb on + strandat 980.492 kb on + strandat 980.492 kb on + strandat 980.493 kb on - strandat 980.566 kb on - strandat 980.566 kb on - strandat 980.605 kb on + strandat 980.605 kb on + strandat 980.607 kb on + strandat 980.607 kb on + strandat 980.608 kb on - strandat 980.608 kb on - strandat 980.637 kb on + strandat 980.863 kb on - strand, within Psyr_0861at 980.889 kb on + strand, within Psyr_0861at 980.889 kb on + strand, within Psyr_0861at 980.898 kb on + strand, within Psyr_0861at 980.899 kb on - strand, within Psyr_0861at 980.924 kb on + strand, within Psyr_0861at 980.925 kb on - strand, within Psyr_0861at 980.928 kb on + strand, within Psyr_0861at 980.928 kb on + strand, within Psyr_0861at 980.928 kb on + strand, within Psyr_0861at 980.928 kb on + strand, within Psyr_0861at 980.928 kb on + strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.929 kb on - strand, within Psyr_0861at 980.987 kb on + strand, within Psyr_0861at 980.988 kb on - strand, within Psyr_0861at 980.988 kb on - strand, within Psyr_0861at 981.095 kb on + strand, within Psyr_0861at 981.096 kb on - strand, within Psyr_0861at 981.096 kb on - strand, within Psyr_0861at 981.096 kb on - strand, within Psyr_0861at 981.396 kb on - strandat 981.396 kb on - strandat 981.415 kb on - strandat 981.439 kb on - strandat 981.500 kb on + strandat 981.500 kb on + strandat 981.500 kb on + strandat 981.501 kb on - strandat 981.501 kb on - strandat 981.501 kb on - strandat 981.501 kb on - strandat 981.503 kb on + strandat 981.504 kb on - strandat 981.504 kb on - strandat 981.504 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours
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977,962 + Psyr_0858 0.69 +0.3
977,962 + Psyr_0858 0.69 +0.1
977,963 - Psyr_0858 0.69 +0.6
978,230 + -0.1
978,230 + +0.9
978,231 - -0.4
978,272 + -0.4
978,273 - -0.5
978,479 + Psyr_0859 0.41 +0.5
978,479 + Psyr_0859 0.41 +0.8
978,479 + Psyr_0859 0.41 -0.5
978,479 + Psyr_0859 0.41 -0.1
978,480 - Psyr_0859 0.41 +0.3
978,480 - Psyr_0859 0.41 -1.0
978,480 - Psyr_0859 0.41 -0.6
978,598 + Psyr_0859 0.59 +0.5
978,598 + Psyr_0859 0.59 +0.6
978,598 + Psyr_0859 0.59 -0.4
978,598 + Psyr_0859 0.59 -1.3
978,598 + Psyr_0859 0.59 +0.6
978,599 - Psyr_0859 0.59 -0.6
978,599 - Psyr_0859 0.59 -0.2
978,599 - Psyr_0859 0.59 +1.0
978,599 - Psyr_0859 0.59 -0.7
978,601 + Psyr_0859 0.60 -0.3
978,763 + Psyr_0859 0.85 +0.5
978,763 + Psyr_0859 0.85 +0.3
978,763 + Psyr_0859 0.85 -0.0
978,764 - Psyr_0859 0.85 -0.4
978,764 - Psyr_0859 0.85 +0.1
978,764 - Psyr_0859 0.85 +0.5
978,764 - Psyr_0859 0.85 -0.3
978,836 - -0.3
978,867 + +1.2
979,032 - -0.3
979,032 - -1.1
979,577 + Psyr_0860 0.39 +0.4
979,741 + Psyr_0860 0.49 -0.4
979,741 + Psyr_0860 0.49 +0.6
979,741 + Psyr_0860 0.49 +0.2
979,741 + Psyr_0860 0.49 +0.1
979,742 - Psyr_0860 0.49 +0.5
979,757 + Psyr_0860 0.50 -0.1
979,758 - Psyr_0860 0.50 -0.1
979,758 - Psyr_0860 0.50 -0.3
979,797 + Psyr_0860 0.53 +0.5
979,798 - Psyr_0860 0.53 +0.2
979,875 + Psyr_0860 0.57 -0.1
979,875 + Psyr_0860 0.57 +0.7
979,876 - Psyr_0860 0.57 -0.5
979,876 - Psyr_0860 0.57 -0.7
979,987 + Psyr_0860 0.64 -0.7
979,987 + Psyr_0860 0.64 +0.5
979,988 - Psyr_0860 0.64 +1.0
979,988 - Psyr_0860 0.64 -0.8
979,988 - Psyr_0860 0.64 +0.2
979,988 - Psyr_0860 0.64 +0.0
979,988 - Psyr_0860 0.64 +0.2
980,008 - Psyr_0860 0.65 +0.3
980,176 + Psyr_0860 0.75 +0.5
980,176 + Psyr_0860 0.75 -0.6
980,176 + Psyr_0860 0.75 +0.2
980,176 + Psyr_0860 0.75 +0.6
980,176 + Psyr_0860 0.75 -1.0
980,176 + Psyr_0860 0.75 +0.4
980,176 + Psyr_0860 0.75 -0.9
980,176 + Psyr_0860 0.75 -0.1
980,176 + Psyr_0860 0.75 -0.4
980,176 + Psyr_0860 0.75 -0.7
980,176 + Psyr_0860 0.75 -0.6
980,177 - Psyr_0860 0.75 -0.3
980,177 - Psyr_0860 0.75 -0.2
980,177 - Psyr_0860 0.75 -0.5
980,177 - Psyr_0860 0.75 -0.4
980,236 + Psyr_0860 0.79 -0.4
980,237 - Psyr_0860 0.79 -0.2
980,237 - Psyr_0860 0.79 -0.3
980,461 - +0.1
980,490 + -1.9
980,490 + -0.7
980,492 + +0.5
980,492 + -0.7
980,493 - +0.8
980,566 - +1.1
980,566 - +0.3
980,605 + -0.3
980,605 + +0.8
980,607 + +0.3
980,607 + -1.2
980,608 - -1.4
980,608 - +0.2
980,637 + -0.3
980,863 - Psyr_0861 0.25 +0.6
980,889 + Psyr_0861 0.29 +0.1
980,889 + Psyr_0861 0.29 +0.8
980,898 + Psyr_0861 0.30 +0.3
980,899 - Psyr_0861 0.30 +0.2
980,924 + Psyr_0861 0.34 -0.4
980,925 - Psyr_0861 0.34 -1.0
980,928 + Psyr_0861 0.35 -0.6
980,928 + Psyr_0861 0.35 -0.9
980,928 + Psyr_0861 0.35 +0.8
980,928 + Psyr_0861 0.35 +0.2
980,928 + Psyr_0861 0.35 -0.5
980,929 - Psyr_0861 0.35 -0.7
980,929 - Psyr_0861 0.35 +0.3
980,929 - Psyr_0861 0.35 +0.8
980,929 - Psyr_0861 0.35 +0.8
980,929 - Psyr_0861 0.35 +2.3
980,929 - Psyr_0861 0.35 +0.1
980,929 - Psyr_0861 0.35 -0.2
980,929 - Psyr_0861 0.35 -0.1
980,987 + Psyr_0861 0.44 -0.2
980,988 - Psyr_0861 0.44 -0.1
980,988 - Psyr_0861 0.44 +0.6
981,095 + Psyr_0861 0.60 -0.0
981,096 - Psyr_0861 0.60 -2.5
981,096 - Psyr_0861 0.60 +0.1
981,096 - Psyr_0861 0.60 -0.8
981,396 - -0.8
981,396 - -0.3
981,415 - -0.5
981,439 - +0.1
981,500 + -0.8
981,500 + +0.1
981,500 + +0.2
981,501 - +0.7
981,501 - +0.2
981,501 - -0.2
981,501 - +0.3
981,503 + +0.2
981,504 - +0.3
981,504 - +0.0
981,504 - -1.2

Or see this region's nucleotide sequence