Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0380

Experiment: library passed through aphids in food, 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0379 and Psyr_0380 are separated by 202 nucleotidesPsyr_0380 and Psyr_0381 are separated by 88 nucleotidesPsyr_0381 and Psyr_0382 overlap by 4 nucleotides Psyr_0379: Psyr_0379 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 408,100 to 410,043 _0379 Psyr_0380: Psyr_0380 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 410,246 to 412,162 _0380 Psyr_0381: Psyr_0381 - Conserved hypothetical protein 46, at 412,251 to 412,958 _0381 Psyr_0382: Psyr_0382 - Sec-independent periplasmic protein translocase, at 412,955 to 413,755 _0382 Position (kb) 410 411 412 413Strain fitness (log2 ratio) -2 -1 0 1at 409.285 kb on + strand, within Psyr_0379at 409.285 kb on + strand, within Psyr_0379at 409.286 kb on - strand, within Psyr_0379at 409.286 kb on - strand, within Psyr_0379at 409.286 kb on - strand, within Psyr_0379at 409.458 kb on + strand, within Psyr_0379at 409.458 kb on + strand, within Psyr_0379at 409.458 kb on + strand, within Psyr_0379at 409.458 kb on + strand, within Psyr_0379at 409.459 kb on - strand, within Psyr_0379at 409.459 kb on - strand, within Psyr_0379at 409.459 kb on - strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.512 kb on + strand, within Psyr_0379at 409.512 kb on + strand, within Psyr_0379at 409.512 kb on + strand, within Psyr_0379at 409.513 kb on - strand, within Psyr_0379at 409.576 kb on + strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.809 kb on + strand, within Psyr_0379at 409.922 kb on + strandat 409.922 kb on + strandat 409.922 kb on + strandat 409.922 kb on + strandat 409.922 kb on + strandat 409.923 kb on - strandat 409.923 kb on - strandat 409.923 kb on - strandat 409.923 kb on - strandat 409.923 kb on - strandat 410.303 kb on + strandat 410.303 kb on + strandat 410.304 kb on - strandat 410.304 kb on - strandat 410.304 kb on - strandat 410.304 kb on - strandat 411.201 kb on - strand, within Psyr_0380at 411.201 kb on - strand, within Psyr_0380at 411.401 kb on - strand, within Psyr_0380at 411.439 kb on - strand, within Psyr_0380at 411.459 kb on + strand, within Psyr_0380at 411.502 kb on - strand, within Psyr_0380at 411.597 kb on + strand, within Psyr_0380at 411.598 kb on - strand, within Psyr_0380at 411.598 kb on - strand, within Psyr_0380at 411.603 kb on + strand, within Psyr_0380at 411.612 kb on - strand, within Psyr_0380at 411.676 kb on + strand, within Psyr_0380at 411.677 kb on - strand, within Psyr_0380at 411.910 kb on + strand, within Psyr_0380at 411.910 kb on + strand, within Psyr_0380at 411.910 kb on + strand, within Psyr_0380at 411.911 kb on - strand, within Psyr_0380at 411.911 kb on - strand, within Psyr_0380at 411.911 kb on - strand, within Psyr_0380at 411.911 kb on - strand, within Psyr_0380at 411.942 kb on + strand, within Psyr_0380at 411.942 kb on + strand, within Psyr_0380at 411.942 kb on + strand, within Psyr_0380at 411.943 kb on - strand, within Psyr_0380at 411.943 kb on - strand, within Psyr_0380at 411.943 kb on - strand, within Psyr_0380at 411.943 kb on - strand, within Psyr_0380at 411.943 kb on - strand, within Psyr_0380at 412.188 kb on + strandat 412.188 kb on + strandat 412.188 kb on + strandat 412.189 kb on - strandat 412.189 kb on - strandat 412.189 kb on - strandat 412.189 kb on - strandat 412.189 kb on - strandat 412.189 kb on - strandat 412.189 kb on - strandat 412.189 kb on - strandat 412.193 kb on - strandat 412.235 kb on - strandat 412.252 kb on + strandat 412.252 kb on + strandat 412.252 kb on + strandat 412.253 kb on - strandat 412.253 kb on - strandat 412.253 kb on - strandat 412.253 kb on - strandat 412.253 kb on - strandat 412.253 kb on - strandat 413.158 kb on - strand, within Psyr_0382

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours
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409,285 + Psyr_0379 0.61 -0.4
409,285 + Psyr_0379 0.61 -0.2
409,286 - Psyr_0379 0.61 +0.1
409,286 - Psyr_0379 0.61 -0.7
409,286 - Psyr_0379 0.61 +0.4
409,458 + Psyr_0379 0.70 +0.2
409,458 + Psyr_0379 0.70 +0.3
409,458 + Psyr_0379 0.70 +0.2
409,458 + Psyr_0379 0.70 +0.3
409,459 - Psyr_0379 0.70 +0.7
409,459 - Psyr_0379 0.70 -1.3
409,459 - Psyr_0379 0.70 -0.2
409,460 + Psyr_0379 0.70 -0.1
409,460 + Psyr_0379 0.70 -0.5
409,460 + Psyr_0379 0.70 -1.6
409,460 + Psyr_0379 0.70 +1.0
409,460 + Psyr_0379 0.70 -0.1
409,460 + Psyr_0379 0.70 +0.1
409,460 + Psyr_0379 0.70 -0.1
409,461 - Psyr_0379 0.70 -0.8
409,461 - Psyr_0379 0.70 +0.2
409,461 - Psyr_0379 0.70 -0.4
409,461 - Psyr_0379 0.70 +0.5
409,461 - Psyr_0379 0.70 -0.9
409,461 - Psyr_0379 0.70 -0.8
409,461 - Psyr_0379 0.70 +0.7
409,461 - Psyr_0379 0.70 +0.5
409,461 - Psyr_0379 0.70 +1.0
409,461 - Psyr_0379 0.70 -0.5
409,461 - Psyr_0379 0.70 -0.3
409,512 + Psyr_0379 0.73 +0.5
409,512 + Psyr_0379 0.73 -0.6
409,512 + Psyr_0379 0.73 +0.7
409,513 - Psyr_0379 0.73 -1.1
409,576 + Psyr_0379 0.76 +0.4
409,577 - Psyr_0379 0.76 +0.0
409,577 - Psyr_0379 0.76 -0.1
409,577 - Psyr_0379 0.76 -0.4
409,577 - Psyr_0379 0.76 +0.6
409,577 - Psyr_0379 0.76 -0.3
409,577 - Psyr_0379 0.76 -1.9
409,577 - Psyr_0379 0.76 +0.7
409,577 - Psyr_0379 0.76 -0.1
409,809 + Psyr_0379 0.88 -0.6
409,922 + -0.4
409,922 + +0.2
409,922 + +0.7
409,922 + -0.6
409,922 + -0.3
409,923 - -0.1
409,923 - +0.8
409,923 - -0.1
409,923 - -0.2
409,923 - +0.1
410,303 + +0.9
410,303 + -1.6
410,304 - -0.7
410,304 - -0.3
410,304 - -0.3
410,304 - -1.6
411,201 - Psyr_0380 0.50 -1.3
411,201 - Psyr_0380 0.50 -0.1
411,401 - Psyr_0380 0.60 +1.0
411,439 - Psyr_0380 0.62 -0.3
411,459 + Psyr_0380 0.63 +0.1
411,502 - Psyr_0380 0.66 -0.3
411,597 + Psyr_0380 0.70 -0.3
411,598 - Psyr_0380 0.71 -0.4
411,598 - Psyr_0380 0.71 -0.2
411,603 + Psyr_0380 0.71 +0.4
411,612 - Psyr_0380 0.71 +1.2
411,676 + Psyr_0380 0.75 -1.6
411,677 - Psyr_0380 0.75 -1.8
411,910 + Psyr_0380 0.87 -0.2
411,910 + Psyr_0380 0.87 +0.0
411,910 + Psyr_0380 0.87 -0.2
411,911 - Psyr_0380 0.87 +0.1
411,911 - Psyr_0380 0.87 -0.1
411,911 - Psyr_0380 0.87 +0.4
411,911 - Psyr_0380 0.87 +0.2
411,942 + Psyr_0380 0.88 +0.1
411,942 + Psyr_0380 0.88 -0.4
411,942 + Psyr_0380 0.88 +0.2
411,943 - Psyr_0380 0.89 -0.3
411,943 - Psyr_0380 0.89 -1.7
411,943 - Psyr_0380 0.89 +0.2
411,943 - Psyr_0380 0.89 -0.2
411,943 - Psyr_0380 0.89 +0.7
412,188 + +0.8
412,188 + -0.2
412,188 + -0.1
412,189 - -0.2
412,189 - +1.0
412,189 - -1.4
412,189 - -0.2
412,189 - +0.6
412,189 - +0.1
412,189 - +0.0
412,189 - +0.0
412,193 - +0.1
412,235 - +0.4
412,252 + +0.2
412,252 + -0.2
412,252 + +0.1
412,253 - +0.3
412,253 - -1.1
412,253 - -1.9
412,253 - -0.8
412,253 - +1.1
412,253 - +0.2
413,158 - Psyr_0382 0.25 -0.8

Or see this region's nucleotide sequence