Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5675 and Pf6N2E2_5676 are separated by 91 nucleotides Pf6N2E2_5676 and Pf6N2E2_5677 are separated by 186 nucleotides Pf6N2E2_5677 and Pf6N2E2_6158 are separated by 62 nucleotides Pf6N2E2_6158 and Pf6N2E2_6159 are separated by 111 nucleotides Pf6N2E2_6159 and Pf6N2E2_6160 are separated by 75 nucleotides Pf6N2E2_6160 and Pf6N2E2_5678 are separated by 43 nucleotides
Pf6N2E2_5675 - Alanyl-tRNA synthetase (EC 6.1.1.7), at 6,487,329 to 6,489,950
_5675
Pf6N2E2_5676 - Aspartokinase (EC 2.7.2.4), at 6,490,042 to 6,491,283
_5676
Pf6N2E2_5677 - Carbon storage regulator, at 6,491,470 to 6,491,658
_5677
Pf6N2E2_6158 - tRNA-Ser-GCT, at 6,491,721 to 6,491,808
_6158
Pf6N2E2_6159 - tRNA-Arg-ACG, at 6,491,920 to 6,491,993
_6159
Pf6N2E2_6160 - tRNA-Arg-ACG, at 6,492,069 to 6,492,142
_6160
Pf6N2E2_5678 - hypothetical protein, at 6,492,186 to 6,492,692
_5678
Position (kb)
6490
6491
6492 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6489.934 kb on + strand at 6489.944 kb on + strand at 6489.948 kb on + strand at 6489.948 kb on + strand at 6489.974 kb on + strand at 6490.006 kb on + strand at 6490.006 kb on + strand at 6490.767 kb on + strand, within Pf6N2E2_5676 at 6490.767 kb on + strand, within Pf6N2E2_5676 at 6490.767 kb on + strand, within Pf6N2E2_5676 at 6490.767 kb on + strand, within Pf6N2E2_5676 at 6490.767 kb on + strand, within Pf6N2E2_5676 at 6490.770 kb on + strand, within Pf6N2E2_5676 at 6491.374 kb on + strand at 6491.374 kb on + strand at 6491.377 kb on + strand at 6491.377 kb on + strand at 6491.377 kb on + strand at 6491.377 kb on + strand at 6491.377 kb on + strand at 6491.407 kb on + strand at 6491.407 kb on + strand at 6491.407 kb on + strand at 6491.444 kb on + strand at 6491.444 kb on + strand at 6491.469 kb on + strand at 6491.469 kb on + strand at 6491.469 kb on + strand at 6491.508 kb on + strand, within Pf6N2E2_5677 at 6491.848 kb on + strand at 6491.999 kb on + strand at 6491.999 kb on + strand at 6492.024 kb on + strand at 6492.256 kb on + strand, within Pf6N2E2_5678 at 6492.256 kb on + strand, within Pf6N2E2_5678 at 6492.256 kb on + strand, within Pf6N2E2_5678 at 6492.256 kb on + strand, within Pf6N2E2_5678 at 6492.256 kb on + strand, within Pf6N2E2_5678 at 6492.256 kb on + strand, within Pf6N2E2_5678 at 6492.256 kb on + strand, within Pf6N2E2_5678 at 6492.256 kb on + strand, within Pf6N2E2_5678 at 6492.256 kb on + strand, within Pf6N2E2_5678 at 6492.257 kb on - strand, within Pf6N2E2_5678 at 6492.257 kb on - strand, within Pf6N2E2_5678 at 6492.257 kb on - strand, within Pf6N2E2_5678 at 6492.257 kb on - strand, within Pf6N2E2_5678 at 6492.257 kb on - strand, within Pf6N2E2_5678 at 6492.257 kb on - strand, within Pf6N2E2_5678 at 6492.257 kb on - strand, within Pf6N2E2_5678 at 6492.260 kb on + strand, within Pf6N2E2_5678 at 6492.260 kb on + strand, within Pf6N2E2_5678 at 6492.260 kb on + strand, within Pf6N2E2_5678 at 6492.261 kb on - strand, within Pf6N2E2_5678 at 6492.262 kb on + strand, within Pf6N2E2_5678
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 6,489,934 + -0.9 6,489,944 + +0.5 6,489,948 + -0.5 6,489,948 + -0.2 6,489,974 + -3.6 6,490,006 + -0.3 6,490,006 + +0.9 6,490,767 + Pf6N2E2_5676 0.58 -3.5 6,490,767 + Pf6N2E2_5676 0.58 -2.5 6,490,767 + Pf6N2E2_5676 0.58 -1.5 6,490,767 + Pf6N2E2_5676 0.58 -2.3 6,490,767 + Pf6N2E2_5676 0.58 -1.8 6,490,770 + Pf6N2E2_5676 0.59 +1.3 6,491,374 + +0.5 6,491,374 + +0.4 6,491,377 + -0.2 6,491,377 + +1.0 6,491,377 + +0.9 6,491,377 + +0.3 6,491,377 + +0.8 6,491,407 + +0.5 6,491,407 + +0.3 6,491,407 + -1.1 6,491,444 + +0.2 6,491,444 + -0.1 6,491,469 + -0.8 6,491,469 + +0.0 6,491,469 + -0.3 6,491,508 + Pf6N2E2_5677 0.20 +0.8 6,491,848 + -2.0 6,491,999 + -0.2 6,491,999 + +0.8 6,492,024 + -0.2 6,492,256 + Pf6N2E2_5678 0.14 +1.3 6,492,256 + Pf6N2E2_5678 0.14 +0.5 6,492,256 + Pf6N2E2_5678 0.14 -0.4 6,492,256 + Pf6N2E2_5678 0.14 -0.2 6,492,256 + Pf6N2E2_5678 0.14 -1.8 6,492,256 + Pf6N2E2_5678 0.14 -0.4 6,492,256 + Pf6N2E2_5678 0.14 -0.9 6,492,256 + Pf6N2E2_5678 0.14 +0.1 6,492,256 + Pf6N2E2_5678 0.14 +0.7 6,492,257 - Pf6N2E2_5678 0.14 +0.5 6,492,257 - Pf6N2E2_5678 0.14 +0.1 6,492,257 - Pf6N2E2_5678 0.14 -0.0 6,492,257 - Pf6N2E2_5678 0.14 +0.8 6,492,257 - Pf6N2E2_5678 0.14 -0.5 6,492,257 - Pf6N2E2_5678 0.14 +1.6 6,492,257 - Pf6N2E2_5678 0.14 -1.3 6,492,260 + Pf6N2E2_5678 0.15 -1.0 6,492,260 + Pf6N2E2_5678 0.15 -0.3 6,492,260 + Pf6N2E2_5678 0.15 -0.2 6,492,261 - Pf6N2E2_5678 0.15 +0.6 6,492,262 + Pf6N2E2_5678 0.15 +1.6
Or see this region's nucleotide sequence