Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5573

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5572 and Pf6N2E2_5573 are separated by 326 nucleotidesPf6N2E2_5573 and Pf6N2E2_5574 are separated by 85 nucleotides Pf6N2E2_5572 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 6,389,850 to 6,391,388 _5572 Pf6N2E2_5573 - Glycerol-3-phosphate regulon repressor, DeoR family, at 6,391,715 to 6,392,470 _5573 Pf6N2E2_5574 - Glycerol kinase (EC 2.7.1.30), at 6,392,556 to 6,394,061 _5574 Position (kb) 6391 6392 6393Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6391.433 kb on - strandat 6391.463 kb on - strandat 6391.556 kb on + strandat 6391.610 kb on + strandat 6391.631 kb on - strandat 6391.682 kb on + strandat 6391.682 kb on + strandat 6391.907 kb on + strand, within Pf6N2E2_5573at 6391.908 kb on - strand, within Pf6N2E2_5573at 6392.039 kb on + strand, within Pf6N2E2_5573at 6392.108 kb on - strand, within Pf6N2E2_5573at 6392.271 kb on + strand, within Pf6N2E2_5573at 6392.299 kb on - strand, within Pf6N2E2_5573at 6392.388 kb on - strand, within Pf6N2E2_5573at 6392.388 kb on - strand, within Pf6N2E2_5573at 6392.415 kb on + strandat 6392.415 kb on + strandat 6392.547 kb on + strandat 6392.557 kb on + strandat 6392.558 kb on - strandat 6392.734 kb on + strand, within Pf6N2E2_5574at 6392.734 kb on + strand, within Pf6N2E2_5574at 6392.734 kb on + strand, within Pf6N2E2_5574at 6392.734 kb on + strand, within Pf6N2E2_5574at 6392.735 kb on - strand, within Pf6N2E2_5574at 6392.735 kb on - strand, within Pf6N2E2_5574at 6392.735 kb on - strand, within Pf6N2E2_5574at 6392.735 kb on - strand, within Pf6N2E2_5574at 6392.895 kb on + strand, within Pf6N2E2_5574at 6392.896 kb on - strand, within Pf6N2E2_5574at 6392.896 kb on - strand, within Pf6N2E2_5574at 6392.911 kb on + strand, within Pf6N2E2_5574at 6392.955 kb on + strand, within Pf6N2E2_5574at 6392.993 kb on - strand, within Pf6N2E2_5574at 6393.004 kb on + strand, within Pf6N2E2_5574at 6393.040 kb on + strand, within Pf6N2E2_5574at 6393.076 kb on + strand, within Pf6N2E2_5574at 6393.274 kb on + strand, within Pf6N2E2_5574at 6393.275 kb on - strand, within Pf6N2E2_5574at 6393.379 kb on + strand, within Pf6N2E2_5574at 6393.379 kb on + strand, within Pf6N2E2_5574at 6393.379 kb on + strand, within Pf6N2E2_5574at 6393.379 kb on + strand, within Pf6N2E2_5574at 6393.379 kb on + strand, within Pf6N2E2_5574at 6393.380 kb on - strand, within Pf6N2E2_5574

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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6,391,433 - +0.5
6,391,463 - +0.5
6,391,556 + +0.3
6,391,610 + +0.2
6,391,631 - +0.5
6,391,682 + -0.1
6,391,682 + +0.3
6,391,907 + Pf6N2E2_5573 0.25 -2.2
6,391,908 - Pf6N2E2_5573 0.26 +0.0
6,392,039 + Pf6N2E2_5573 0.43 -0.8
6,392,108 - Pf6N2E2_5573 0.52 -1.4
6,392,271 + Pf6N2E2_5573 0.74 -1.2
6,392,299 - Pf6N2E2_5573 0.77 -1.4
6,392,388 - Pf6N2E2_5573 0.89 +0.1
6,392,388 - Pf6N2E2_5573 0.89 -0.9
6,392,415 + -0.3
6,392,415 + +2.9
6,392,547 + +0.5
6,392,557 + +1.0
6,392,558 - -0.5
6,392,734 + Pf6N2E2_5574 0.12 +0.4
6,392,734 + Pf6N2E2_5574 0.12 -0.3
6,392,734 + Pf6N2E2_5574 0.12 +0.5
6,392,734 + Pf6N2E2_5574 0.12 +0.2
6,392,735 - Pf6N2E2_5574 0.12 +0.1
6,392,735 - Pf6N2E2_5574 0.12 -0.2
6,392,735 - Pf6N2E2_5574 0.12 -0.5
6,392,735 - Pf6N2E2_5574 0.12 -1.0
6,392,895 + Pf6N2E2_5574 0.23 -0.9
6,392,896 - Pf6N2E2_5574 0.23 -0.8
6,392,896 - Pf6N2E2_5574 0.23 +0.6
6,392,911 + Pf6N2E2_5574 0.24 -0.4
6,392,955 + Pf6N2E2_5574 0.26 +1.1
6,392,993 - Pf6N2E2_5574 0.29 +0.4
6,393,004 + Pf6N2E2_5574 0.30 -1.7
6,393,040 + Pf6N2E2_5574 0.32 +0.8
6,393,076 + Pf6N2E2_5574 0.35 +0.3
6,393,274 + Pf6N2E2_5574 0.48 +0.6
6,393,275 - Pf6N2E2_5574 0.48 +1.7
6,393,379 + Pf6N2E2_5574 0.55 +0.7
6,393,379 + Pf6N2E2_5574 0.55 -0.2
6,393,379 + Pf6N2E2_5574 0.55 +2.1
6,393,379 + Pf6N2E2_5574 0.55 +0.2
6,393,379 + Pf6N2E2_5574 0.55 +0.3
6,393,380 - Pf6N2E2_5574 0.55 +0.4

Or see this region's nucleotide sequence