Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5572 and Pf6N2E2_5573 are separated by 326 nucleotides Pf6N2E2_5573 and Pf6N2E2_5574 are separated by 85 nucleotides
Pf6N2E2_5572 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 6,389,850 to 6,391,388
_5572
Pf6N2E2_5573 - Glycerol-3-phosphate regulon repressor, DeoR family, at 6,391,715 to 6,392,470
_5573
Pf6N2E2_5574 - Glycerol kinase (EC 2.7.1.30), at 6,392,556 to 6,394,061
_5574
Position (kb)
6391
6392
6393 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6391.433 kb on - strand at 6391.463 kb on - strand at 6391.556 kb on + strand at 6391.610 kb on + strand at 6391.631 kb on - strand at 6391.682 kb on + strand at 6391.682 kb on + strand at 6391.907 kb on + strand, within Pf6N2E2_5573 at 6391.908 kb on - strand, within Pf6N2E2_5573 at 6392.039 kb on + strand, within Pf6N2E2_5573 at 6392.108 kb on - strand, within Pf6N2E2_5573 at 6392.271 kb on + strand, within Pf6N2E2_5573 at 6392.299 kb on - strand, within Pf6N2E2_5573 at 6392.388 kb on - strand, within Pf6N2E2_5573 at 6392.388 kb on - strand, within Pf6N2E2_5573 at 6392.415 kb on + strand at 6392.415 kb on + strand at 6392.547 kb on + strand at 6392.557 kb on + strand at 6392.558 kb on - strand at 6392.734 kb on + strand, within Pf6N2E2_5574 at 6392.734 kb on + strand, within Pf6N2E2_5574 at 6392.734 kb on + strand, within Pf6N2E2_5574 at 6392.734 kb on + strand, within Pf6N2E2_5574 at 6392.735 kb on - strand, within Pf6N2E2_5574 at 6392.735 kb on - strand, within Pf6N2E2_5574 at 6392.735 kb on - strand, within Pf6N2E2_5574 at 6392.735 kb on - strand, within Pf6N2E2_5574 at 6392.895 kb on + strand, within Pf6N2E2_5574 at 6392.896 kb on - strand, within Pf6N2E2_5574 at 6392.896 kb on - strand, within Pf6N2E2_5574 at 6392.911 kb on + strand, within Pf6N2E2_5574 at 6392.955 kb on + strand, within Pf6N2E2_5574 at 6392.993 kb on - strand, within Pf6N2E2_5574 at 6393.004 kb on + strand, within Pf6N2E2_5574 at 6393.040 kb on + strand, within Pf6N2E2_5574 at 6393.076 kb on + strand, within Pf6N2E2_5574 at 6393.274 kb on + strand, within Pf6N2E2_5574 at 6393.275 kb on - strand, within Pf6N2E2_5574 at 6393.379 kb on + strand, within Pf6N2E2_5574 at 6393.379 kb on + strand, within Pf6N2E2_5574 at 6393.379 kb on + strand, within Pf6N2E2_5574 at 6393.379 kb on + strand, within Pf6N2E2_5574 at 6393.379 kb on + strand, within Pf6N2E2_5574 at 6393.380 kb on - strand, within Pf6N2E2_5574
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 6,391,433 - +0.5 6,391,463 - +0.5 6,391,556 + +0.3 6,391,610 + +0.2 6,391,631 - +0.5 6,391,682 + -0.1 6,391,682 + +0.3 6,391,907 + Pf6N2E2_5573 0.25 -2.2 6,391,908 - Pf6N2E2_5573 0.26 +0.0 6,392,039 + Pf6N2E2_5573 0.43 -0.8 6,392,108 - Pf6N2E2_5573 0.52 -1.4 6,392,271 + Pf6N2E2_5573 0.74 -1.2 6,392,299 - Pf6N2E2_5573 0.77 -1.4 6,392,388 - Pf6N2E2_5573 0.89 +0.1 6,392,388 - Pf6N2E2_5573 0.89 -0.9 6,392,415 + -0.3 6,392,415 + +2.9 6,392,547 + +0.5 6,392,557 + +1.0 6,392,558 - -0.5 6,392,734 + Pf6N2E2_5574 0.12 +0.4 6,392,734 + Pf6N2E2_5574 0.12 -0.3 6,392,734 + Pf6N2E2_5574 0.12 +0.5 6,392,734 + Pf6N2E2_5574 0.12 +0.2 6,392,735 - Pf6N2E2_5574 0.12 +0.1 6,392,735 - Pf6N2E2_5574 0.12 -0.2 6,392,735 - Pf6N2E2_5574 0.12 -0.5 6,392,735 - Pf6N2E2_5574 0.12 -1.0 6,392,895 + Pf6N2E2_5574 0.23 -0.9 6,392,896 - Pf6N2E2_5574 0.23 -0.8 6,392,896 - Pf6N2E2_5574 0.23 +0.6 6,392,911 + Pf6N2E2_5574 0.24 -0.4 6,392,955 + Pf6N2E2_5574 0.26 +1.1 6,392,993 - Pf6N2E2_5574 0.29 +0.4 6,393,004 + Pf6N2E2_5574 0.30 -1.7 6,393,040 + Pf6N2E2_5574 0.32 +0.8 6,393,076 + Pf6N2E2_5574 0.35 +0.3 6,393,274 + Pf6N2E2_5574 0.48 +0.6 6,393,275 - Pf6N2E2_5574 0.48 +1.7 6,393,379 + Pf6N2E2_5574 0.55 +0.7 6,393,379 + Pf6N2E2_5574 0.55 -0.2 6,393,379 + Pf6N2E2_5574 0.55 +2.1 6,393,379 + Pf6N2E2_5574 0.55 +0.2 6,393,379 + Pf6N2E2_5574 0.55 +0.3 6,393,380 - Pf6N2E2_5574 0.55 +0.4
Or see this region's nucleotide sequence