Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4761

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4759 and Pf6N2E2_4760 overlap by 19 nucleotidesPf6N2E2_4760 and Pf6N2E2_4761 are separated by 36 nucleotidesPf6N2E2_4761 and Pf6N2E2_4762 overlap by 8 nucleotidesPf6N2E2_4762 and Pf6N2E2_4763 overlap by 8 nucleotides Pf6N2E2_4759 - Biotin synthase (EC 2.8.1.6), at 5,498,157 to 5,499,212 _4759 Pf6N2E2_4760 - hypothetical protein, at 5,499,194 to 5,499,337 _4760 Pf6N2E2_4761 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 5,499,374 to 5,500,552 _4761 Pf6N2E2_4762 - Biotin synthesis protein BioH, at 5,500,545 to 5,501,276 _4762 Pf6N2E2_4763 - Biotin synthesis protein BioC, at 5,501,269 to 5,502,081 _4763 Position (kb) 5499 5500 5501Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.509 kb on - strand, within Pf6N2E2_4759at 5498.509 kb on - strand, within Pf6N2E2_4759at 5498.509 kb on - strand, within Pf6N2E2_4759at 5498.619 kb on + strand, within Pf6N2E2_4759at 5498.619 kb on + strand, within Pf6N2E2_4759at 5498.620 kb on - strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.630 kb on + strand, within Pf6N2E2_4759at 5498.630 kb on + strand, within Pf6N2E2_4759at 5498.631 kb on - strand, within Pf6N2E2_4759at 5498.631 kb on - strand, within Pf6N2E2_4759at 5498.631 kb on - strand, within Pf6N2E2_4759at 5498.656 kb on - strand, within Pf6N2E2_4759at 5498.656 kb on - strand, within Pf6N2E2_4759at 5498.683 kb on - strand, within Pf6N2E2_4759at 5498.683 kb on - strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.710 kb on - strand, within Pf6N2E2_4759at 5498.710 kb on - strand, within Pf6N2E2_4759at 5498.710 kb on - strand, within Pf6N2E2_4759at 5499.195 kb on + strandat 5499.196 kb on - strandat 5499.196 kb on - strandat 5499.356 kb on + strandat 5499.426 kb on - strandat 5499.513 kb on - strand, within Pf6N2E2_4761at 5499.513 kb on - strand, within Pf6N2E2_4761at 5499.692 kb on + strand, within Pf6N2E2_4761at 5499.692 kb on + strand, within Pf6N2E2_4761at 5499.692 kb on + strand, within Pf6N2E2_4761at 5499.692 kb on + strand, within Pf6N2E2_4761at 5499.693 kb on - strand, within Pf6N2E2_4761at 5499.816 kb on - strand, within Pf6N2E2_4761at 5499.872 kb on - strand, within Pf6N2E2_4761at 5500.157 kb on + strand, within Pf6N2E2_4761at 5500.157 kb on + strand, within Pf6N2E2_4761at 5500.157 kb on + strand, within Pf6N2E2_4761at 5500.157 kb on + strand, within Pf6N2E2_4761at 5500.157 kb on + strand, within Pf6N2E2_4761at 5500.158 kb on - strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.319 kb on - strand, within Pf6N2E2_4761at 5500.319 kb on - strand, within Pf6N2E2_4761at 5500.319 kb on - strand, within Pf6N2E2_4761at 5500.491 kb on + strandat 5500.491 kb on + strandat 5500.491 kb on + strandat 5500.491 kb on + strandat 5500.491 kb on + strandat 5500.491 kb on + strandat 5500.491 kb on + strandat 5500.492 kb on - strandat 5500.492 kb on - strandat 5500.561 kb on + strandat 5500.561 kb on + strandat 5500.561 kb on + strandat 5500.561 kb on + strandat 5500.561 kb on + strandat 5500.561 kb on + strandat 5500.562 kb on - strandat 5500.562 kb on - strandat 5500.987 kb on + strand, within Pf6N2E2_4762at 5500.987 kb on + strand, within Pf6N2E2_4762at 5500.988 kb on - strand, within Pf6N2E2_4762at 5501.057 kb on + strand, within Pf6N2E2_4762at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.356 kb on + strand, within Pf6N2E2_4763at 5501.357 kb on - strand, within Pf6N2E2_4763at 5501.357 kb on - strand, within Pf6N2E2_4763at 5501.357 kb on - strand, within Pf6N2E2_4763at 5501.357 kb on - strand, within Pf6N2E2_4763at 5501.464 kb on + strand, within Pf6N2E2_4763at 5501.465 kb on - strand, within Pf6N2E2_4763at 5501.465 kb on - strand, within Pf6N2E2_4763

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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5,498,508 + Pf6N2E2_4759 0.33 -1.9
5,498,508 + Pf6N2E2_4759 0.33 -2.6
5,498,508 + Pf6N2E2_4759 0.33 -2.9
5,498,508 + Pf6N2E2_4759 0.33 -0.1
5,498,508 + Pf6N2E2_4759 0.33 -3.7
5,498,508 + Pf6N2E2_4759 0.33 -4.3
5,498,508 + Pf6N2E2_4759 0.33 -2.8
5,498,508 + Pf6N2E2_4759 0.33 -1.5
5,498,508 + Pf6N2E2_4759 0.33 -3.1
5,498,508 + Pf6N2E2_4759 0.33 -3.9
5,498,508 + Pf6N2E2_4759 0.33 -3.5
5,498,508 + Pf6N2E2_4759 0.33 -3.6
5,498,508 + Pf6N2E2_4759 0.33 -3.7
5,498,509 - Pf6N2E2_4759 0.33 -4.1
5,498,509 - Pf6N2E2_4759 0.33 -1.8
5,498,509 - Pf6N2E2_4759 0.33 -2.1
5,498,619 + Pf6N2E2_4759 0.44 -2.4
5,498,619 + Pf6N2E2_4759 0.44 -2.9
5,498,620 - Pf6N2E2_4759 0.44 -1.1
5,498,622 + Pf6N2E2_4759 0.44 -3.6
5,498,622 + Pf6N2E2_4759 0.44 -2.0
5,498,622 + Pf6N2E2_4759 0.44 -1.6
5,498,622 + Pf6N2E2_4759 0.44 -3.3
5,498,622 + Pf6N2E2_4759 0.44 -2.2
5,498,622 + Pf6N2E2_4759 0.44 -3.2
5,498,622 + Pf6N2E2_4759 0.44 -1.1
5,498,622 + Pf6N2E2_4759 0.44 -3.9
5,498,622 + Pf6N2E2_4759 0.44 -3.5
5,498,622 + Pf6N2E2_4759 0.44 -2.6
5,498,622 + Pf6N2E2_4759 0.44 -3.6
5,498,622 + Pf6N2E2_4759 0.44 -2.9
5,498,623 - Pf6N2E2_4759 0.44 -4.7
5,498,623 - Pf6N2E2_4759 0.44 -1.5
5,498,623 - Pf6N2E2_4759 0.44 -3.8
5,498,623 - Pf6N2E2_4759 0.44 -1.3
5,498,623 - Pf6N2E2_4759 0.44 -2.5
5,498,623 - Pf6N2E2_4759 0.44 -2.8
5,498,623 - Pf6N2E2_4759 0.44 -1.7
5,498,630 + Pf6N2E2_4759 0.45 -4.0
5,498,630 + Pf6N2E2_4759 0.45 -1.3
5,498,631 - Pf6N2E2_4759 0.45 -2.0
5,498,631 - Pf6N2E2_4759 0.45 +0.5
5,498,631 - Pf6N2E2_4759 0.45 -2.8
5,498,656 - Pf6N2E2_4759 0.47 -2.9
5,498,656 - Pf6N2E2_4759 0.47 -1.3
5,498,683 - Pf6N2E2_4759 0.50 -1.3
5,498,683 - Pf6N2E2_4759 0.50 -2.3
5,498,709 + Pf6N2E2_4759 0.52 -2.7
5,498,709 + Pf6N2E2_4759 0.52 -1.7
5,498,709 + Pf6N2E2_4759 0.52 -1.4
5,498,709 + Pf6N2E2_4759 0.52 -3.2
5,498,709 + Pf6N2E2_4759 0.52 -2.0
5,498,709 + Pf6N2E2_4759 0.52 -2.6
5,498,710 - Pf6N2E2_4759 0.52 -2.3
5,498,710 - Pf6N2E2_4759 0.52 -2.2
5,498,710 - Pf6N2E2_4759 0.52 -1.7
5,499,195 + +0.6
5,499,196 - -3.6
5,499,196 - -1.3
5,499,356 + -0.6
5,499,426 - -2.6
5,499,513 - Pf6N2E2_4761 0.12 -3.2
5,499,513 - Pf6N2E2_4761 0.12 -3.0
5,499,692 + Pf6N2E2_4761 0.27 -4.2
5,499,692 + Pf6N2E2_4761 0.27 -1.4
5,499,692 + Pf6N2E2_4761 0.27 -0.0
5,499,692 + Pf6N2E2_4761 0.27 -2.9
5,499,693 - Pf6N2E2_4761 0.27 -2.1
5,499,816 - Pf6N2E2_4761 0.37 -3.9
5,499,872 - Pf6N2E2_4761 0.42 -2.8
5,500,157 + Pf6N2E2_4761 0.66 -4.0
5,500,157 + Pf6N2E2_4761 0.66 -3.9
5,500,157 + Pf6N2E2_4761 0.66 -3.9
5,500,157 + Pf6N2E2_4761 0.66 -4.1
5,500,157 + Pf6N2E2_4761 0.66 -2.9
5,500,158 - Pf6N2E2_4761 0.66 -3.3
5,500,163 + Pf6N2E2_4761 0.67 -0.9
5,500,163 + Pf6N2E2_4761 0.67 -3.1
5,500,163 + Pf6N2E2_4761 0.67 -0.1
5,500,163 + Pf6N2E2_4761 0.67 -3.1
5,500,163 + Pf6N2E2_4761 0.67 -4.5
5,500,163 + Pf6N2E2_4761 0.67 -2.6
5,500,163 + Pf6N2E2_4761 0.67 -4.4
5,500,164 - Pf6N2E2_4761 0.67 -3.2
5,500,164 - Pf6N2E2_4761 0.67 -1.5
5,500,164 - Pf6N2E2_4761 0.67 -2.7
5,500,164 - Pf6N2E2_4761 0.67 -2.7
5,500,164 - Pf6N2E2_4761 0.67 -3.2
5,500,164 - Pf6N2E2_4761 0.67 -2.8
5,500,164 - Pf6N2E2_4761 0.67 -2.8
5,500,164 - Pf6N2E2_4761 0.67 -2.2
5,500,164 - Pf6N2E2_4761 0.67 +0.1
5,500,319 - Pf6N2E2_4761 0.80 -1.1
5,500,319 - Pf6N2E2_4761 0.80 -1.8
5,500,319 - Pf6N2E2_4761 0.80 -2.2
5,500,491 + -2.6
5,500,491 + -2.2
5,500,491 + -4.1
5,500,491 + +1.1
5,500,491 + -3.0
5,500,491 + -3.2
5,500,491 + -3.7
5,500,492 - -3.8
5,500,492 - -2.5
5,500,561 + +1.0
5,500,561 + -0.6
5,500,561 + -1.3
5,500,561 + -0.4
5,500,561 + -1.0
5,500,561 + -2.2
5,500,562 - -2.8
5,500,562 - -2.0
5,500,987 + Pf6N2E2_4762 0.60 -1.9
5,500,987 + Pf6N2E2_4762 0.60 -3.0
5,500,988 - Pf6N2E2_4762 0.61 -1.9
5,501,057 + Pf6N2E2_4762 0.70 -3.3
5,501,356 + Pf6N2E2_4763 0.11 -3.2
5,501,356 + Pf6N2E2_4763 0.11 -1.3
5,501,356 + Pf6N2E2_4763 0.11 -2.9
5,501,356 + Pf6N2E2_4763 0.11 -1.2
5,501,356 + Pf6N2E2_4763 0.11 -4.5
5,501,356 + Pf6N2E2_4763 0.11 -3.0
5,501,356 + Pf6N2E2_4763 0.11 -1.7
5,501,356 + Pf6N2E2_4763 0.11 -3.4
5,501,356 + Pf6N2E2_4763 0.11 -3.5
5,501,356 + Pf6N2E2_4763 0.11 -0.8
5,501,356 + Pf6N2E2_4763 0.11 -3.3
5,501,356 + Pf6N2E2_4763 0.11 -2.6
5,501,356 + Pf6N2E2_4763 0.11 -1.8
5,501,356 + Pf6N2E2_4763 0.11 -1.5
5,501,356 + Pf6N2E2_4763 0.11 -3.1
5,501,357 - Pf6N2E2_4763 0.11 -3.5
5,501,357 - Pf6N2E2_4763 0.11 -4.0
5,501,357 - Pf6N2E2_4763 0.11 -2.1
5,501,357 - Pf6N2E2_4763 0.11 -3.7
5,501,464 + Pf6N2E2_4763 0.24 -2.3
5,501,465 - Pf6N2E2_4763 0.24 -1.7
5,501,465 - Pf6N2E2_4763 0.24 -1.8

Or see this region's nucleotide sequence