Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_468 and Pf6N2E2_469 are separated by 251 nucleotides Pf6N2E2_469 and Pf6N2E2_470 overlap by 4 nucleotides Pf6N2E2_470 and Pf6N2E2_471 overlap by 1 nucleotides
Pf6N2E2_468 - DNA alkylation repair enzyme, at 534,448 to 535,551
_468
Pf6N2E2_469 - lipoprotein, putative, at 535,803 to 536,111
_469
Pf6N2E2_470 - hypothetical protein, at 536,108 to 536,431
_470
Pf6N2E2_471 - putative metalloprotease, at 536,431 to 537,492
_471
Position (kb) 535
536
537 Strain fitness (log2 ratio) -1
0
1
2 at 534.971 kb on + strand, within Pf6N2E2_468 at 534.971 kb on + strand, within Pf6N2E2_468 at 534.972 kb on - strand, within Pf6N2E2_468 at 534.972 kb on - strand, within Pf6N2E2_468 at 534.972 kb on - strand, within Pf6N2E2_468 at 534.972 kb on - strand, within Pf6N2E2_468 at 534.972 kb on - strand, within Pf6N2E2_468 at 535.096 kb on + strand, within Pf6N2E2_468 at 535.208 kb on + strand, within Pf6N2E2_468 at 535.209 kb on - strand, within Pf6N2E2_468 at 535.251 kb on - strand, within Pf6N2E2_468 at 535.251 kb on - strand, within Pf6N2E2_468 at 535.262 kb on + strand, within Pf6N2E2_468 at 535.262 kb on + strand, within Pf6N2E2_468 at 535.262 kb on + strand, within Pf6N2E2_468 at 535.262 kb on + strand, within Pf6N2E2_468 at 535.262 kb on + strand, within Pf6N2E2_468 at 535.263 kb on - strand, within Pf6N2E2_468 at 535.263 kb on - strand, within Pf6N2E2_468 at 535.263 kb on - strand, within Pf6N2E2_468 at 535.263 kb on - strand, within Pf6N2E2_468 at 535.354 kb on + strand, within Pf6N2E2_468 at 535.460 kb on + strand at 535.581 kb on + strand at 535.582 kb on - strand at 535.582 kb on - strand at 535.582 kb on - strand at 535.582 kb on - strand at 535.584 kb on - strand at 535.584 kb on - strand at 535.740 kb on - strand at 536.052 kb on + strand, within Pf6N2E2_469 at 536.052 kb on + strand, within Pf6N2E2_469 at 536.053 kb on - strand, within Pf6N2E2_469 at 536.110 kb on - strand at 536.110 kb on - strand at 536.591 kb on + strand at 536.648 kb on + strand, within Pf6N2E2_471 at 536.648 kb on + strand, within Pf6N2E2_471 at 536.648 kb on + strand, within Pf6N2E2_471 at 536.649 kb on - strand, within Pf6N2E2_471 at 536.649 kb on - strand, within Pf6N2E2_471 at 536.873 kb on - strand, within Pf6N2E2_471 at 536.942 kb on + strand, within Pf6N2E2_471 at 536.943 kb on - strand, within Pf6N2E2_471 at 537.095 kb on + strand, within Pf6N2E2_471 at 537.096 kb on - strand, within Pf6N2E2_471
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 534,971 + Pf6N2E2_468 0.47 -0.3 534,971 + Pf6N2E2_468 0.47 +0.4 534,972 - Pf6N2E2_468 0.47 -0.4 534,972 - Pf6N2E2_468 0.47 -0.7 534,972 - Pf6N2E2_468 0.47 -0.7 534,972 - Pf6N2E2_468 0.47 +0.3 534,972 - Pf6N2E2_468 0.47 +0.0 535,096 + Pf6N2E2_468 0.59 +0.2 535,208 + Pf6N2E2_468 0.69 +0.3 535,209 - Pf6N2E2_468 0.69 +0.1 535,251 - Pf6N2E2_468 0.73 +0.7 535,251 - Pf6N2E2_468 0.73 -0.7 535,262 + Pf6N2E2_468 0.74 -1.5 535,262 + Pf6N2E2_468 0.74 +1.1 535,262 + Pf6N2E2_468 0.74 +0.2 535,262 + Pf6N2E2_468 0.74 +0.2 535,262 + Pf6N2E2_468 0.74 +0.9 535,263 - Pf6N2E2_468 0.74 -0.0 535,263 - Pf6N2E2_468 0.74 -0.0 535,263 - Pf6N2E2_468 0.74 -0.8 535,263 - Pf6N2E2_468 0.74 -1.5 535,354 + Pf6N2E2_468 0.82 -1.6 535,460 + -0.9 535,581 + +1.1 535,582 - +1.2 535,582 - +0.5 535,582 - +0.4 535,582 - +2.5 535,584 - -0.5 535,584 - +0.4 535,740 - +0.7 536,052 + Pf6N2E2_469 0.81 -1.1 536,052 + Pf6N2E2_469 0.81 +0.5 536,053 - Pf6N2E2_469 0.81 -1.4 536,110 - +0.9 536,110 - +0.5 536,591 + +0.5 536,648 + Pf6N2E2_471 0.20 -0.0 536,648 + Pf6N2E2_471 0.20 +1.3 536,648 + Pf6N2E2_471 0.20 +1.7 536,649 - Pf6N2E2_471 0.21 +0.1 536,649 - Pf6N2E2_471 0.21 +0.7 536,873 - Pf6N2E2_471 0.42 +1.8 536,942 + Pf6N2E2_471 0.48 +0.4 536,943 - Pf6N2E2_471 0.48 -0.3 537,095 + Pf6N2E2_471 0.63 -1.3 537,096 - Pf6N2E2_471 0.63 +0.8
Or see this region's nucleotide sequence