Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4326

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4325 and Pf6N2E2_4326 are separated by 504 nucleotidesPf6N2E2_4326 and Pf6N2E2_4327 are separated by 158 nucleotides Pf6N2E2_4325 - hypothetical protein, at 5,045,283 to 5,045,816 _4325 Pf6N2E2_4326 - VgrG protein, at 5,046,321 to 5,048,261 _4326 Pf6N2E2_4327 - ClpB protein, at 5,048,420 to 5,051,110 _4327 Position (kb) 5046 5047 5048 5049Strain fitness (log2 ratio) -2 -1 0 1at 5045.807 kb on + strandat 5045.841 kb on + strandat 5045.841 kb on + strandat 5045.841 kb on + strandat 5045.842 kb on - strandat 5045.842 kb on - strandat 5045.842 kb on - strandat 5045.842 kb on - strandat 5045.889 kb on - strandat 5045.945 kb on + strandat 5045.945 kb on + strandat 5045.945 kb on + strandat 5045.945 kb on + strandat 5045.945 kb on + strandat 5045.946 kb on - strandat 5045.946 kb on - strandat 5045.946 kb on - strandat 5045.946 kb on - strandat 5045.946 kb on - strandat 5045.946 kb on - strandat 5045.946 kb on - strandat 5045.949 kb on + strandat 5045.949 kb on + strandat 5045.949 kb on + strandat 5045.950 kb on - strandat 5045.950 kb on - strandat 5045.989 kb on + strandat 5045.989 kb on + strandat 5045.989 kb on + strandat 5045.990 kb on - strandat 5046.096 kb on + strandat 5046.096 kb on + strandat 5046.097 kb on - strandat 5046.138 kb on - strandat 5046.469 kb on + strandat 5046.470 kb on - strandat 5046.470 kb on - strandat 5046.470 kb on - strandat 5046.473 kb on + strandat 5046.473 kb on + strandat 5046.473 kb on + strandat 5046.474 kb on - strandat 5046.495 kb on - strandat 5046.497 kb on + strandat 5046.497 kb on + strandat 5046.498 kb on - strandat 5046.574 kb on + strand, within Pf6N2E2_4326at 5046.575 kb on - strand, within Pf6N2E2_4326at 5046.575 kb on - strand, within Pf6N2E2_4326at 5046.881 kb on - strand, within Pf6N2E2_4326at 5046.904 kb on + strand, within Pf6N2E2_4326at 5046.904 kb on + strand, within Pf6N2E2_4326at 5047.286 kb on - strand, within Pf6N2E2_4326at 5047.286 kb on - strand, within Pf6N2E2_4326at 5047.286 kb on - strand, within Pf6N2E2_4326at 5047.286 kb on - strand, within Pf6N2E2_4326at 5047.310 kb on - strand, within Pf6N2E2_4326at 5047.310 kb on - strand, within Pf6N2E2_4326at 5047.441 kb on + strand, within Pf6N2E2_4326at 5047.442 kb on - strand, within Pf6N2E2_4326at 5047.468 kb on + strand, within Pf6N2E2_4326at 5047.468 kb on + strand, within Pf6N2E2_4326at 5047.468 kb on + strand, within Pf6N2E2_4326at 5047.468 kb on + strand, within Pf6N2E2_4326at 5047.468 kb on + strand, within Pf6N2E2_4326at 5047.468 kb on + strand, within Pf6N2E2_4326at 5047.468 kb on + strand, within Pf6N2E2_4326at 5047.468 kb on + strand, within Pf6N2E2_4326at 5047.469 kb on - strand, within Pf6N2E2_4326at 5047.469 kb on - strand, within Pf6N2E2_4326at 5047.469 kb on - strand, within Pf6N2E2_4326at 5047.469 kb on - strand, within Pf6N2E2_4326at 5047.469 kb on - strand, within Pf6N2E2_4326at 5047.469 kb on - strand, within Pf6N2E2_4326at 5047.469 kb on - strand, within Pf6N2E2_4326at 5047.469 kb on - strand, within Pf6N2E2_4326at 5047.469 kb on - strand, within Pf6N2E2_4326at 5047.568 kb on - strand, within Pf6N2E2_4326at 5047.625 kb on + strand, within Pf6N2E2_4326at 5047.625 kb on + strand, within Pf6N2E2_4326at 5047.626 kb on - strand, within Pf6N2E2_4326at 5047.626 kb on - strand, within Pf6N2E2_4326at 5047.661 kb on - strand, within Pf6N2E2_4326at 5047.663 kb on + strand, within Pf6N2E2_4326at 5047.663 kb on + strand, within Pf6N2E2_4326at 5047.663 kb on + strand, within Pf6N2E2_4326at 5047.757 kb on - strand, within Pf6N2E2_4326at 5047.757 kb on - strand, within Pf6N2E2_4326at 5047.760 kb on - strand, within Pf6N2E2_4326at 5047.760 kb on - strand, within Pf6N2E2_4326at 5047.813 kb on + strand, within Pf6N2E2_4326at 5047.825 kb on + strand, within Pf6N2E2_4326at 5047.825 kb on + strand, within Pf6N2E2_4326at 5047.840 kb on + strand, within Pf6N2E2_4326at 5048.149 kb on + strandat 5048.256 kb on + strandat 5048.279 kb on + strandat 5048.336 kb on + strandat 5048.336 kb on + strandat 5048.442 kb on + strandat 5048.443 kb on - strandat 5048.724 kb on + strand, within Pf6N2E2_4327at 5048.725 kb on - strand, within Pf6N2E2_4327at 5049.012 kb on + strand, within Pf6N2E2_4327at 5049.013 kb on - strand, within Pf6N2E2_4327at 5049.066 kb on + strand, within Pf6N2E2_4327at 5049.066 kb on + strand, within Pf6N2E2_4327at 5049.156 kb on + strand, within Pf6N2E2_4327at 5049.156 kb on + strand, within Pf6N2E2_4327at 5049.156 kb on + strand, within Pf6N2E2_4327at 5049.157 kb on - strand, within Pf6N2E2_4327at 5049.157 kb on - strand, within Pf6N2E2_4327

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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5,045,807 + +1.2
5,045,841 + -0.3
5,045,841 + +0.6
5,045,841 + +0.1
5,045,842 - -0.3
5,045,842 - +0.7
5,045,842 - +0.7
5,045,842 - +0.7
5,045,889 - -1.3
5,045,945 + +0.3
5,045,945 + +0.4
5,045,945 + +1.0
5,045,945 + +0.8
5,045,945 + +0.5
5,045,946 - +0.5
5,045,946 - -0.0
5,045,946 - -0.7
5,045,946 - +0.1
5,045,946 - -2.7
5,045,946 - -0.1
5,045,946 - -0.9
5,045,949 + +0.1
5,045,949 + -0.1
5,045,949 + -1.0
5,045,950 - -1.6
5,045,950 - -1.3
5,045,989 + -0.4
5,045,989 + -0.2
5,045,989 + -0.2
5,045,990 - +0.8
5,046,096 + +1.5
5,046,096 + -0.5
5,046,097 - -0.7
5,046,138 - +0.1
5,046,469 + -0.3
5,046,470 - -0.4
5,046,470 - +0.6
5,046,470 - +0.5
5,046,473 + +0.8
5,046,473 + +0.6
5,046,473 + +1.6
5,046,474 - -1.0
5,046,495 - -1.4
5,046,497 + -0.1
5,046,497 + -0.4
5,046,498 - +0.3
5,046,574 + Pf6N2E2_4326 0.13 +1.6
5,046,575 - Pf6N2E2_4326 0.13 +0.9
5,046,575 - Pf6N2E2_4326 0.13 +0.3
5,046,881 - Pf6N2E2_4326 0.29 +0.0
5,046,904 + Pf6N2E2_4326 0.30 +1.3
5,046,904 + Pf6N2E2_4326 0.30 +0.9
5,047,286 - Pf6N2E2_4326 0.50 -0.4
5,047,286 - Pf6N2E2_4326 0.50 -0.2
5,047,286 - Pf6N2E2_4326 0.50 +0.4
5,047,286 - Pf6N2E2_4326 0.50 -0.2
5,047,310 - Pf6N2E2_4326 0.51 -0.2
5,047,310 - Pf6N2E2_4326 0.51 +0.5
5,047,441 + Pf6N2E2_4326 0.58 +0.7
5,047,442 - Pf6N2E2_4326 0.58 +0.3
5,047,468 + Pf6N2E2_4326 0.59 +1.4
5,047,468 + Pf6N2E2_4326 0.59 -0.5
5,047,468 + Pf6N2E2_4326 0.59 +0.4
5,047,468 + Pf6N2E2_4326 0.59 -0.7
5,047,468 + Pf6N2E2_4326 0.59 +1.4
5,047,468 + Pf6N2E2_4326 0.59 +1.0
5,047,468 + Pf6N2E2_4326 0.59 +0.9
5,047,468 + Pf6N2E2_4326 0.59 +0.0
5,047,469 - Pf6N2E2_4326 0.59 +0.1
5,047,469 - Pf6N2E2_4326 0.59 +0.5
5,047,469 - Pf6N2E2_4326 0.59 +0.4
5,047,469 - Pf6N2E2_4326 0.59 +0.3
5,047,469 - Pf6N2E2_4326 0.59 +1.6
5,047,469 - Pf6N2E2_4326 0.59 +1.2
5,047,469 - Pf6N2E2_4326 0.59 +0.3
5,047,469 - Pf6N2E2_4326 0.59 +1.3
5,047,469 - Pf6N2E2_4326 0.59 +0.8
5,047,568 - Pf6N2E2_4326 0.64 -0.3
5,047,625 + Pf6N2E2_4326 0.67 +0.5
5,047,625 + Pf6N2E2_4326 0.67 -0.2
5,047,626 - Pf6N2E2_4326 0.67 +0.1
5,047,626 - Pf6N2E2_4326 0.67 +1.1
5,047,661 - Pf6N2E2_4326 0.69 +0.3
5,047,663 + Pf6N2E2_4326 0.69 +0.5
5,047,663 + Pf6N2E2_4326 0.69 +0.6
5,047,663 + Pf6N2E2_4326 0.69 -0.0
5,047,757 - Pf6N2E2_4326 0.74 -0.6
5,047,757 - Pf6N2E2_4326 0.74 -0.8
5,047,760 - Pf6N2E2_4326 0.74 +1.4
5,047,760 - Pf6N2E2_4326 0.74 -0.4
5,047,813 + Pf6N2E2_4326 0.77 +1.5
5,047,825 + Pf6N2E2_4326 0.77 +0.4
5,047,825 + Pf6N2E2_4326 0.77 +0.3
5,047,840 + Pf6N2E2_4326 0.78 -0.1
5,048,149 + -0.2
5,048,256 + -0.4
5,048,279 + +0.2
5,048,336 + -0.4
5,048,336 + +0.8
5,048,442 + +0.0
5,048,443 - +0.1
5,048,724 + Pf6N2E2_4327 0.11 -0.6
5,048,725 - Pf6N2E2_4327 0.11 -0.0
5,049,012 + Pf6N2E2_4327 0.22 +0.7
5,049,013 - Pf6N2E2_4327 0.22 +0.4
5,049,066 + Pf6N2E2_4327 0.24 +0.5
5,049,066 + Pf6N2E2_4327 0.24 +0.3
5,049,156 + Pf6N2E2_4327 0.27 +0.9
5,049,156 + Pf6N2E2_4327 0.27 +0.9
5,049,156 + Pf6N2E2_4327 0.27 +0.0
5,049,157 - Pf6N2E2_4327 0.27 +0.3
5,049,157 - Pf6N2E2_4327 0.27 +1.5

Or see this region's nucleotide sequence