Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2835 and Pf6N2E2_2836 overlap by 1 nucleotides Pf6N2E2_2836 and Pf6N2E2_2837 overlap by 4 nucleotides Pf6N2E2_2837 and Pf6N2E2_2838 are separated by 307 nucleotides
Pf6N2E2_2835 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 3,324,236 to 3,325,438
_2835
Pf6N2E2_2836 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6); Glutaconate CoA-transferase subunit B (EC 2.8.3.12), at 3,325,438 to 3,326,217
_2836
Pf6N2E2_2837 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12), at 3,326,214 to 3,327,074
_2837
Pf6N2E2_2838 - 4-hydroxybenzoate transporter, at 3,327,382 to 3,328,728
_2838
Position (kb)
3326
3327
3328 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.424 kb on - strand at 3325.424 kb on - strand at 3325.424 kb on - strand at 3325.424 kb on - strand at 3325.425 kb on + strand at 3325.425 kb on + strand at 3325.425 kb on + strand at 3325.425 kb on + strand at 3325.426 kb on - strand at 3325.426 kb on - strand at 3325.426 kb on - strand at 3325.511 kb on - strand at 3325.668 kb on + strand, within Pf6N2E2_2836 at 3325.868 kb on + strand, within Pf6N2E2_2836 at 3325.869 kb on - strand, within Pf6N2E2_2836 at 3325.869 kb on - strand, within Pf6N2E2_2836 at 3326.038 kb on + strand, within Pf6N2E2_2836 at 3326.039 kb on - strand, within Pf6N2E2_2836 at 3326.039 kb on - strand, within Pf6N2E2_2836 at 3326.072 kb on + strand, within Pf6N2E2_2836 at 3326.073 kb on - strand, within Pf6N2E2_2836 at 3326.073 kb on - strand, within Pf6N2E2_2836 at 3326.073 kb on - strand, within Pf6N2E2_2836 at 3326.152 kb on + strand at 3326.152 kb on + strand at 3326.210 kb on + strand at 3326.211 kb on - strand at 3326.211 kb on - strand at 3326.211 kb on - strand at 3326.284 kb on + strand at 3326.284 kb on + strand at 3326.284 kb on + strand at 3326.285 kb on - strand at 3326.285 kb on - strand at 3326.344 kb on + strand, within Pf6N2E2_2837 at 3326.344 kb on + strand, within Pf6N2E2_2837 at 3326.344 kb on + strand, within Pf6N2E2_2837 at 3326.345 kb on - strand, within Pf6N2E2_2837 at 3326.369 kb on - strand, within Pf6N2E2_2837 at 3326.380 kb on + strand, within Pf6N2E2_2837 at 3326.380 kb on + strand, within Pf6N2E2_2837 at 3326.381 kb on - strand, within Pf6N2E2_2837 at 3326.439 kb on + strand, within Pf6N2E2_2837 at 3326.439 kb on + strand, within Pf6N2E2_2837 at 3326.440 kb on - strand, within Pf6N2E2_2837 at 3326.616 kb on + strand, within Pf6N2E2_2837 at 3326.628 kb on + strand, within Pf6N2E2_2837 at 3326.629 kb on - strand, within Pf6N2E2_2837 at 3326.743 kb on + strand, within Pf6N2E2_2837 at 3326.743 kb on + strand, within Pf6N2E2_2837 at 3326.744 kb on - strand, within Pf6N2E2_2837 at 3326.744 kb on - strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.906 kb on - strand, within Pf6N2E2_2837 at 3326.906 kb on - strand, within Pf6N2E2_2837 at 3326.906 kb on - strand, within Pf6N2E2_2837 at 3327.128 kb on - strand at 3327.128 kb on - strand at 3327.150 kb on + strand at 3327.150 kb on + strand at 3327.151 kb on - strand at 3327.328 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.370 kb on - strand at 3327.370 kb on - strand at 3327.370 kb on - strand at 3327.370 kb on - strand at 3327.725 kb on + strand, within Pf6N2E2_2838 at 3327.890 kb on + strand, within Pf6N2E2_2838 at 3327.890 kb on + strand, within Pf6N2E2_2838 at 3327.914 kb on + strand, within Pf6N2E2_2838 at 3327.915 kb on - strand, within Pf6N2E2_2838 at 3327.915 kb on - strand, within Pf6N2E2_2838 at 3327.947 kb on + strand, within Pf6N2E2_2838 at 3327.947 kb on + strand, within Pf6N2E2_2838 at 3327.948 kb on - strand, within Pf6N2E2_2838 at 3327.948 kb on - strand, within Pf6N2E2_2838 at 3327.948 kb on - strand, within Pf6N2E2_2838
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 3,325,423 + -3.5 3,325,423 + -4.3 3,325,423 + -3.9 3,325,423 + -3.0 3,325,423 + -3.7 3,325,423 + -1.0 3,325,423 + -3.4 3,325,424 - -2.5 3,325,424 - -4.6 3,325,424 - -2.5 3,325,424 - -3.0 3,325,425 + -1.7 3,325,425 + -2.2 3,325,425 + -2.8 3,325,425 + -3.0 3,325,426 - -2.7 3,325,426 - -3.5 3,325,426 - -3.3 3,325,511 - -3.8 3,325,668 + Pf6N2E2_2836 0.29 -4.4 3,325,868 + Pf6N2E2_2836 0.55 -3.2 3,325,869 - Pf6N2E2_2836 0.55 -3.3 3,325,869 - Pf6N2E2_2836 0.55 -3.5 3,326,038 + Pf6N2E2_2836 0.77 -4.2 3,326,039 - Pf6N2E2_2836 0.77 -3.0 3,326,039 - Pf6N2E2_2836 0.77 +0.1 3,326,072 + Pf6N2E2_2836 0.81 -3.8 3,326,073 - Pf6N2E2_2836 0.81 -3.9 3,326,073 - Pf6N2E2_2836 0.81 -3.4 3,326,073 - Pf6N2E2_2836 0.81 -2.9 3,326,152 + -2.3 3,326,152 + -4.0 3,326,210 + -1.3 3,326,211 - -2.6 3,326,211 - -3.2 3,326,211 - -2.0 3,326,284 + -4.1 3,326,284 + -2.0 3,326,284 + -1.5 3,326,285 - -5.0 3,326,285 - -3.2 3,326,344 + Pf6N2E2_2837 0.15 -2.0 3,326,344 + Pf6N2E2_2837 0.15 -1.8 3,326,344 + Pf6N2E2_2837 0.15 -1.3 3,326,345 - Pf6N2E2_2837 0.15 -3.3 3,326,369 - Pf6N2E2_2837 0.18 -1.8 3,326,380 + Pf6N2E2_2837 0.19 -1.3 3,326,380 + Pf6N2E2_2837 0.19 -2.1 3,326,381 - Pf6N2E2_2837 0.19 -0.2 3,326,439 + Pf6N2E2_2837 0.26 -4.0 3,326,439 + Pf6N2E2_2837 0.26 -3.1 3,326,440 - Pf6N2E2_2837 0.26 -2.5 3,326,616 + Pf6N2E2_2837 0.47 +0.0 3,326,628 + Pf6N2E2_2837 0.48 -3.2 3,326,629 - Pf6N2E2_2837 0.48 -3.6 3,326,743 + Pf6N2E2_2837 0.61 -3.1 3,326,743 + Pf6N2E2_2837 0.61 -3.9 3,326,744 - Pf6N2E2_2837 0.62 -4.4 3,326,744 - Pf6N2E2_2837 0.62 -2.5 3,326,905 + Pf6N2E2_2837 0.80 -2.6 3,326,905 + Pf6N2E2_2837 0.80 -4.7 3,326,905 + Pf6N2E2_2837 0.80 -2.4 3,326,905 + Pf6N2E2_2837 0.80 -3.0 3,326,905 + Pf6N2E2_2837 0.80 -2.7 3,326,905 + Pf6N2E2_2837 0.80 -2.6 3,326,905 + Pf6N2E2_2837 0.80 -3.4 3,326,906 - Pf6N2E2_2837 0.80 -3.1 3,326,906 - Pf6N2E2_2837 0.80 -3.9 3,326,906 - Pf6N2E2_2837 0.80 -3.4 3,327,128 - -1.4 3,327,128 - -3.9 3,327,150 + -3.5 3,327,150 + -3.3 3,327,151 - -3.3 3,327,328 + -1.3 3,327,369 + +0.3 3,327,369 + -1.0 3,327,369 + +2.6 3,327,369 + +0.1 3,327,369 + -0.3 3,327,369 + -1.0 3,327,369 + -0.8 3,327,369 + -0.4 3,327,370 - +0.3 3,327,370 - +0.0 3,327,370 - -1.8 3,327,370 - +1.5 3,327,725 + Pf6N2E2_2838 0.25 +0.6 3,327,890 + Pf6N2E2_2838 0.38 -0.9 3,327,890 + Pf6N2E2_2838 0.38 +0.1 3,327,914 + Pf6N2E2_2838 0.39 -0.7 3,327,915 - Pf6N2E2_2838 0.40 +0.6 3,327,915 - Pf6N2E2_2838 0.40 +0.7 3,327,947 + Pf6N2E2_2838 0.42 -1.0 3,327,947 + Pf6N2E2_2838 0.42 +0.2 3,327,948 - Pf6N2E2_2838 0.42 -0.0 3,327,948 - Pf6N2E2_2838 0.42 +0.2 3,327,948 - Pf6N2E2_2838 0.42 -0.2
Or see this region's nucleotide sequence