Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2837

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2835 and Pf6N2E2_2836 overlap by 1 nucleotidesPf6N2E2_2836 and Pf6N2E2_2837 overlap by 4 nucleotidesPf6N2E2_2837 and Pf6N2E2_2838 are separated by 307 nucleotides Pf6N2E2_2835 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 3,324,236 to 3,325,438 _2835 Pf6N2E2_2836 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6); Glutaconate CoA-transferase subunit B (EC 2.8.3.12), at 3,325,438 to 3,326,217 _2836 Pf6N2E2_2837 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12), at 3,326,214 to 3,327,074 _2837 Pf6N2E2_2838 - 4-hydroxybenzoate transporter, at 3,327,382 to 3,328,728 _2838 Position (kb) 3326 3327 3328Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3325.423 kb on + strandat 3325.423 kb on + strandat 3325.423 kb on + strandat 3325.423 kb on + strandat 3325.423 kb on + strandat 3325.423 kb on + strandat 3325.423 kb on + strandat 3325.424 kb on - strandat 3325.424 kb on - strandat 3325.424 kb on - strandat 3325.424 kb on - strandat 3325.425 kb on + strandat 3325.425 kb on + strandat 3325.425 kb on + strandat 3325.425 kb on + strandat 3325.426 kb on - strandat 3325.426 kb on - strandat 3325.426 kb on - strandat 3325.511 kb on - strandat 3325.668 kb on + strand, within Pf6N2E2_2836at 3325.868 kb on + strand, within Pf6N2E2_2836at 3325.869 kb on - strand, within Pf6N2E2_2836at 3325.869 kb on - strand, within Pf6N2E2_2836at 3326.038 kb on + strand, within Pf6N2E2_2836at 3326.039 kb on - strand, within Pf6N2E2_2836at 3326.039 kb on - strand, within Pf6N2E2_2836at 3326.072 kb on + strand, within Pf6N2E2_2836at 3326.073 kb on - strand, within Pf6N2E2_2836at 3326.073 kb on - strand, within Pf6N2E2_2836at 3326.073 kb on - strand, within Pf6N2E2_2836at 3326.152 kb on + strandat 3326.152 kb on + strandat 3326.210 kb on + strandat 3326.211 kb on - strandat 3326.211 kb on - strandat 3326.211 kb on - strandat 3326.284 kb on + strandat 3326.284 kb on + strandat 3326.284 kb on + strandat 3326.285 kb on - strandat 3326.285 kb on - strandat 3326.344 kb on + strand, within Pf6N2E2_2837at 3326.344 kb on + strand, within Pf6N2E2_2837at 3326.344 kb on + strand, within Pf6N2E2_2837at 3326.345 kb on - strand, within Pf6N2E2_2837at 3326.369 kb on - strand, within Pf6N2E2_2837at 3326.380 kb on + strand, within Pf6N2E2_2837at 3326.380 kb on + strand, within Pf6N2E2_2837at 3326.381 kb on - strand, within Pf6N2E2_2837at 3326.439 kb on + strand, within Pf6N2E2_2837at 3326.439 kb on + strand, within Pf6N2E2_2837at 3326.440 kb on - strand, within Pf6N2E2_2837at 3326.616 kb on + strand, within Pf6N2E2_2837at 3326.628 kb on + strand, within Pf6N2E2_2837at 3326.629 kb on - strand, within Pf6N2E2_2837at 3326.743 kb on + strand, within Pf6N2E2_2837at 3326.743 kb on + strand, within Pf6N2E2_2837at 3326.744 kb on - strand, within Pf6N2E2_2837at 3326.744 kb on - strand, within Pf6N2E2_2837at 3326.905 kb on + strand, within Pf6N2E2_2837at 3326.905 kb on + strand, within Pf6N2E2_2837at 3326.905 kb on + strand, within Pf6N2E2_2837at 3326.905 kb on + strand, within Pf6N2E2_2837at 3326.905 kb on + strand, within Pf6N2E2_2837at 3326.905 kb on + strand, within Pf6N2E2_2837at 3326.905 kb on + strand, within Pf6N2E2_2837at 3326.906 kb on - strand, within Pf6N2E2_2837at 3326.906 kb on - strand, within Pf6N2E2_2837at 3326.906 kb on - strand, within Pf6N2E2_2837at 3327.128 kb on - strandat 3327.128 kb on - strandat 3327.150 kb on + strandat 3327.150 kb on + strandat 3327.151 kb on - strandat 3327.328 kb on + strandat 3327.369 kb on + strandat 3327.369 kb on + strandat 3327.369 kb on + strandat 3327.369 kb on + strandat 3327.369 kb on + strandat 3327.369 kb on + strandat 3327.369 kb on + strandat 3327.369 kb on + strandat 3327.370 kb on - strandat 3327.370 kb on - strandat 3327.370 kb on - strandat 3327.370 kb on - strandat 3327.725 kb on + strand, within Pf6N2E2_2838at 3327.890 kb on + strand, within Pf6N2E2_2838at 3327.890 kb on + strand, within Pf6N2E2_2838at 3327.914 kb on + strand, within Pf6N2E2_2838at 3327.915 kb on - strand, within Pf6N2E2_2838at 3327.915 kb on - strand, within Pf6N2E2_2838at 3327.947 kb on + strand, within Pf6N2E2_2838at 3327.947 kb on + strand, within Pf6N2E2_2838at 3327.948 kb on - strand, within Pf6N2E2_2838at 3327.948 kb on - strand, within Pf6N2E2_2838at 3327.948 kb on - strand, within Pf6N2E2_2838

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,325,423 + -3.5
3,325,423 + -4.3
3,325,423 + -3.9
3,325,423 + -3.0
3,325,423 + -3.7
3,325,423 + -1.0
3,325,423 + -3.4
3,325,424 - -2.5
3,325,424 - -4.6
3,325,424 - -2.5
3,325,424 - -3.0
3,325,425 + -1.7
3,325,425 + -2.2
3,325,425 + -2.8
3,325,425 + -3.0
3,325,426 - -2.7
3,325,426 - -3.5
3,325,426 - -3.3
3,325,511 - -3.8
3,325,668 + Pf6N2E2_2836 0.29 -4.4
3,325,868 + Pf6N2E2_2836 0.55 -3.2
3,325,869 - Pf6N2E2_2836 0.55 -3.3
3,325,869 - Pf6N2E2_2836 0.55 -3.5
3,326,038 + Pf6N2E2_2836 0.77 -4.2
3,326,039 - Pf6N2E2_2836 0.77 -3.0
3,326,039 - Pf6N2E2_2836 0.77 +0.1
3,326,072 + Pf6N2E2_2836 0.81 -3.8
3,326,073 - Pf6N2E2_2836 0.81 -3.9
3,326,073 - Pf6N2E2_2836 0.81 -3.4
3,326,073 - Pf6N2E2_2836 0.81 -2.9
3,326,152 + -2.3
3,326,152 + -4.0
3,326,210 + -1.3
3,326,211 - -2.6
3,326,211 - -3.2
3,326,211 - -2.0
3,326,284 + -4.1
3,326,284 + -2.0
3,326,284 + -1.5
3,326,285 - -5.0
3,326,285 - -3.2
3,326,344 + Pf6N2E2_2837 0.15 -2.0
3,326,344 + Pf6N2E2_2837 0.15 -1.8
3,326,344 + Pf6N2E2_2837 0.15 -1.3
3,326,345 - Pf6N2E2_2837 0.15 -3.3
3,326,369 - Pf6N2E2_2837 0.18 -1.8
3,326,380 + Pf6N2E2_2837 0.19 -1.3
3,326,380 + Pf6N2E2_2837 0.19 -2.1
3,326,381 - Pf6N2E2_2837 0.19 -0.2
3,326,439 + Pf6N2E2_2837 0.26 -4.0
3,326,439 + Pf6N2E2_2837 0.26 -3.1
3,326,440 - Pf6N2E2_2837 0.26 -2.5
3,326,616 + Pf6N2E2_2837 0.47 +0.0
3,326,628 + Pf6N2E2_2837 0.48 -3.2
3,326,629 - Pf6N2E2_2837 0.48 -3.6
3,326,743 + Pf6N2E2_2837 0.61 -3.1
3,326,743 + Pf6N2E2_2837 0.61 -3.9
3,326,744 - Pf6N2E2_2837 0.62 -4.4
3,326,744 - Pf6N2E2_2837 0.62 -2.5
3,326,905 + Pf6N2E2_2837 0.80 -2.6
3,326,905 + Pf6N2E2_2837 0.80 -4.7
3,326,905 + Pf6N2E2_2837 0.80 -2.4
3,326,905 + Pf6N2E2_2837 0.80 -3.0
3,326,905 + Pf6N2E2_2837 0.80 -2.7
3,326,905 + Pf6N2E2_2837 0.80 -2.6
3,326,905 + Pf6N2E2_2837 0.80 -3.4
3,326,906 - Pf6N2E2_2837 0.80 -3.1
3,326,906 - Pf6N2E2_2837 0.80 -3.9
3,326,906 - Pf6N2E2_2837 0.80 -3.4
3,327,128 - -1.4
3,327,128 - -3.9
3,327,150 + -3.5
3,327,150 + -3.3
3,327,151 - -3.3
3,327,328 + -1.3
3,327,369 + +0.3
3,327,369 + -1.0
3,327,369 + +2.6
3,327,369 + +0.1
3,327,369 + -0.3
3,327,369 + -1.0
3,327,369 + -0.8
3,327,369 + -0.4
3,327,370 - +0.3
3,327,370 - +0.0
3,327,370 - -1.8
3,327,370 - +1.5
3,327,725 + Pf6N2E2_2838 0.25 +0.6
3,327,890 + Pf6N2E2_2838 0.38 -0.9
3,327,890 + Pf6N2E2_2838 0.38 +0.1
3,327,914 + Pf6N2E2_2838 0.39 -0.7
3,327,915 - Pf6N2E2_2838 0.40 +0.6
3,327,915 - Pf6N2E2_2838 0.40 +0.7
3,327,947 + Pf6N2E2_2838 0.42 -1.0
3,327,947 + Pf6N2E2_2838 0.42 +0.2
3,327,948 - Pf6N2E2_2838 0.42 -0.0
3,327,948 - Pf6N2E2_2838 0.42 +0.2
3,327,948 - Pf6N2E2_2838 0.42 -0.2

Or see this region's nucleotide sequence