Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2605

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2604 and Pf6N2E2_2605 are separated by 83 nucleotidesPf6N2E2_2605 and Pf6N2E2_2606 overlap by 18 nucleotidesPf6N2E2_2606 and Pf6N2E2_2607 are separated by 16 nucleotides Pf6N2E2_2604 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 3,060,847 to 3,062,139 _2604 Pf6N2E2_2605 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 3,062,223 to 3,063,104 _2605 Pf6N2E2_2606 - hypothetical protein, at 3,063,087 to 3,063,332 _2606 Pf6N2E2_2607 - N-acetylneuraminate synthase (EC 2.5.1.56), at 3,063,349 to 3,064,401 _2607 Position (kb) 3062 3063 3064Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3061.296 kb on - strand, within Pf6N2E2_2604at 3061.347 kb on + strand, within Pf6N2E2_2604at 3061.348 kb on - strand, within Pf6N2E2_2604at 3061.348 kb on - strand, within Pf6N2E2_2604at 3061.348 kb on - strand, within Pf6N2E2_2604at 3061.348 kb on - strand, within Pf6N2E2_2604at 3061.414 kb on - strand, within Pf6N2E2_2604at 3061.498 kb on - strand, within Pf6N2E2_2604at 3061.682 kb on + strand, within Pf6N2E2_2604at 3061.682 kb on + strand, within Pf6N2E2_2604at 3061.683 kb on - strand, within Pf6N2E2_2604at 3061.754 kb on + strand, within Pf6N2E2_2604at 3061.754 kb on + strand, within Pf6N2E2_2604at 3061.754 kb on + strand, within Pf6N2E2_2604at 3061.911 kb on - strand, within Pf6N2E2_2604at 3061.911 kb on - strand, within Pf6N2E2_2604at 3061.911 kb on - strand, within Pf6N2E2_2604at 3061.998 kb on + strand, within Pf6N2E2_2604at 3061.999 kb on - strand, within Pf6N2E2_2604at 3062.107 kb on + strandat 3062.108 kb on - strandat 3062.170 kb on + strandat 3062.183 kb on + strandat 3062.263 kb on - strandat 3062.337 kb on - strand, within Pf6N2E2_2605at 3062.337 kb on - strand, within Pf6N2E2_2605at 3062.785 kb on + strand, within Pf6N2E2_2605at 3062.786 kb on - strand, within Pf6N2E2_2605at 3062.786 kb on - strand, within Pf6N2E2_2605at 3062.795 kb on - strand, within Pf6N2E2_2605at 3062.795 kb on - strand, within Pf6N2E2_2605at 3062.800 kb on + strand, within Pf6N2E2_2605at 3062.801 kb on - strand, within Pf6N2E2_2605at 3062.822 kb on + strand, within Pf6N2E2_2605at 3062.823 kb on - strand, within Pf6N2E2_2605at 3062.823 kb on - strand, within Pf6N2E2_2605at 3062.823 kb on - strand, within Pf6N2E2_2605at 3062.844 kb on - strand, within Pf6N2E2_2605at 3063.094 kb on + strandat 3063.095 kb on - strandat 3063.095 kb on - strandat 3063.095 kb on - strandat 3063.095 kb on - strandat 3063.095 kb on - strandat 3063.122 kb on - strand, within Pf6N2E2_2606at 3063.122 kb on - strand, within Pf6N2E2_2606at 3063.138 kb on + strand, within Pf6N2E2_2606at 3063.139 kb on - strand, within Pf6N2E2_2606at 3063.178 kb on + strand, within Pf6N2E2_2606at 3063.224 kb on + strand, within Pf6N2E2_2606at 3063.224 kb on + strand, within Pf6N2E2_2606at 3063.225 kb on - strand, within Pf6N2E2_2606at 3063.225 kb on - strand, within Pf6N2E2_2606at 3063.233 kb on - strand, within Pf6N2E2_2606at 3063.276 kb on + strand, within Pf6N2E2_2606at 3063.276 kb on + strand, within Pf6N2E2_2606at 3063.276 kb on + strand, within Pf6N2E2_2606at 3063.276 kb on + strand, within Pf6N2E2_2606at 3063.276 kb on + strand, within Pf6N2E2_2606at 3063.277 kb on - strand, within Pf6N2E2_2606at 3063.277 kb on - strand, within Pf6N2E2_2606at 3063.277 kb on - strand, within Pf6N2E2_2606at 3063.277 kb on - strand, within Pf6N2E2_2606at 3063.281 kb on + strand, within Pf6N2E2_2606at 3063.281 kb on + strand, within Pf6N2E2_2606at 3063.281 kb on + strand, within Pf6N2E2_2606at 3063.282 kb on - strand, within Pf6N2E2_2606at 3063.282 kb on - strand, within Pf6N2E2_2606at 3063.282 kb on - strandat 3063.282 kb on - strand, within Pf6N2E2_2606at 3063.299 kb on + strand, within Pf6N2E2_2606at 3063.331 kb on - strandat 3063.331 kb on - strandat 3063.480 kb on + strand, within Pf6N2E2_2607at 3063.515 kb on + strand, within Pf6N2E2_2607at 3063.516 kb on - strand, within Pf6N2E2_2607at 3063.516 kb on - strand, within Pf6N2E2_2607at 3063.531 kb on - strand, within Pf6N2E2_2607at 3063.566 kb on + strand, within Pf6N2E2_2607at 3063.566 kb on + strand, within Pf6N2E2_2607at 3063.567 kb on - strand, within Pf6N2E2_2607at 3063.778 kb on + strand, within Pf6N2E2_2607at 3063.778 kb on + strand, within Pf6N2E2_2607at 3063.778 kb on + strand, within Pf6N2E2_2607at 3063.779 kb on - strand, within Pf6N2E2_2607at 3063.798 kb on + strand, within Pf6N2E2_2607at 3063.798 kb on + strand, within Pf6N2E2_2607at 3063.799 kb on - strand, within Pf6N2E2_2607at 3063.833 kb on + strand, within Pf6N2E2_2607at 3063.834 kb on - strand, within Pf6N2E2_2607at 3063.837 kb on + strand, within Pf6N2E2_2607at 3063.837 kb on + strand, within Pf6N2E2_2607at 3063.837 kb on + strand, within Pf6N2E2_2607at 3063.838 kb on - strand, within Pf6N2E2_2607at 3063.838 kb on - strand, within Pf6N2E2_2607at 3063.838 kb on - strand, within Pf6N2E2_2607at 3063.838 kb on - strand, within Pf6N2E2_2607at 3063.838 kb on - strand, within Pf6N2E2_2607at 3063.838 kb on - strand, within Pf6N2E2_2607at 3063.838 kb on - strand, within Pf6N2E2_2607at 3063.857 kb on - strand, within Pf6N2E2_2607at 3063.937 kb on - strand, within Pf6N2E2_2607at 3063.937 kb on - strand, within Pf6N2E2_2607at 3063.937 kb on - strand, within Pf6N2E2_2607at 3063.979 kb on + strand, within Pf6N2E2_2607at 3063.979 kb on + strand, within Pf6N2E2_2607at 3063.979 kb on + strand, within Pf6N2E2_2607at 3064.010 kb on + strand, within Pf6N2E2_2607at 3064.010 kb on + strand, within Pf6N2E2_2607

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,061,296 - Pf6N2E2_2604 0.35 -0.3
3,061,347 + Pf6N2E2_2604 0.39 -0.1
3,061,348 - Pf6N2E2_2604 0.39 +1.7
3,061,348 - Pf6N2E2_2604 0.39 +0.1
3,061,348 - Pf6N2E2_2604 0.39 +1.0
3,061,348 - Pf6N2E2_2604 0.39 +0.8
3,061,414 - Pf6N2E2_2604 0.44 +0.5
3,061,498 - Pf6N2E2_2604 0.50 -0.0
3,061,682 + Pf6N2E2_2604 0.65 -0.8
3,061,682 + Pf6N2E2_2604 0.65 -0.0
3,061,683 - Pf6N2E2_2604 0.65 -0.3
3,061,754 + Pf6N2E2_2604 0.70 -1.1
3,061,754 + Pf6N2E2_2604 0.70 +0.7
3,061,754 + Pf6N2E2_2604 0.70 -0.6
3,061,911 - Pf6N2E2_2604 0.82 +0.2
3,061,911 - Pf6N2E2_2604 0.82 +1.8
3,061,911 - Pf6N2E2_2604 0.82 +0.2
3,061,998 + Pf6N2E2_2604 0.89 +0.6
3,061,999 - Pf6N2E2_2604 0.89 -1.1
3,062,107 + +0.2
3,062,108 - +1.9
3,062,170 + -0.3
3,062,183 + +0.4
3,062,263 - -1.9
3,062,337 - Pf6N2E2_2605 0.13 -0.3
3,062,337 - Pf6N2E2_2605 0.13 -0.9
3,062,785 + Pf6N2E2_2605 0.64 -1.2
3,062,786 - Pf6N2E2_2605 0.64 -2.7
3,062,786 - Pf6N2E2_2605 0.64 -0.8
3,062,795 - Pf6N2E2_2605 0.65 -2.4
3,062,795 - Pf6N2E2_2605 0.65 -1.9
3,062,800 + Pf6N2E2_2605 0.65 -0.7
3,062,801 - Pf6N2E2_2605 0.66 -0.9
3,062,822 + Pf6N2E2_2605 0.68 +1.0
3,062,823 - Pf6N2E2_2605 0.68 -0.5
3,062,823 - Pf6N2E2_2605 0.68 +0.4
3,062,823 - Pf6N2E2_2605 0.68 -1.0
3,062,844 - Pf6N2E2_2605 0.70 -1.1
3,063,094 + -1.7
3,063,095 - +0.9
3,063,095 - -0.1
3,063,095 - -2.6
3,063,095 - -0.6
3,063,095 - -2.0
3,063,122 - Pf6N2E2_2606 0.14 -1.3
3,063,122 - Pf6N2E2_2606 0.14 -1.3
3,063,138 + Pf6N2E2_2606 0.21 -0.8
3,063,139 - Pf6N2E2_2606 0.21 -2.0
3,063,178 + Pf6N2E2_2606 0.37 -0.5
3,063,224 + Pf6N2E2_2606 0.56 -0.6
3,063,224 + Pf6N2E2_2606 0.56 +0.4
3,063,225 - Pf6N2E2_2606 0.56 -3.0
3,063,225 - Pf6N2E2_2606 0.56 +0.3
3,063,233 - Pf6N2E2_2606 0.59 -0.1
3,063,276 + Pf6N2E2_2606 0.77 -1.4
3,063,276 + Pf6N2E2_2606 0.77 -1.3
3,063,276 + Pf6N2E2_2606 0.77 -0.4
3,063,276 + Pf6N2E2_2606 0.77 -0.3
3,063,276 + Pf6N2E2_2606 0.77 +1.2
3,063,277 - Pf6N2E2_2606 0.77 -1.6
3,063,277 - Pf6N2E2_2606 0.77 +0.1
3,063,277 - Pf6N2E2_2606 0.77 -0.7
3,063,277 - Pf6N2E2_2606 0.77 -0.1
3,063,281 + Pf6N2E2_2606 0.79 -1.3
3,063,281 + Pf6N2E2_2606 0.79 +0.3
3,063,281 + Pf6N2E2_2606 0.79 -0.5
3,063,282 - Pf6N2E2_2606 0.79 -0.8
3,063,282 - Pf6N2E2_2606 0.79 -1.8
3,063,282 - -2.1
3,063,282 - Pf6N2E2_2606 0.79 +0.3
3,063,299 + Pf6N2E2_2606 0.86 -0.7
3,063,331 - +0.2
3,063,331 - +0.7
3,063,480 + Pf6N2E2_2607 0.12 -1.6
3,063,515 + Pf6N2E2_2607 0.16 +1.1
3,063,516 - Pf6N2E2_2607 0.16 +0.2
3,063,516 - Pf6N2E2_2607 0.16 +0.0
3,063,531 - Pf6N2E2_2607 0.17 -0.1
3,063,566 + Pf6N2E2_2607 0.21 +1.9
3,063,566 + Pf6N2E2_2607 0.21 +0.3
3,063,567 - Pf6N2E2_2607 0.21 +0.1
3,063,778 + Pf6N2E2_2607 0.41 -0.1
3,063,778 + Pf6N2E2_2607 0.41 -1.0
3,063,778 + Pf6N2E2_2607 0.41 -0.5
3,063,779 - Pf6N2E2_2607 0.41 +0.3
3,063,798 + Pf6N2E2_2607 0.43 +0.3
3,063,798 + Pf6N2E2_2607 0.43 -0.2
3,063,799 - Pf6N2E2_2607 0.43 +0.5
3,063,833 + Pf6N2E2_2607 0.46 +0.4
3,063,834 - Pf6N2E2_2607 0.46 -0.1
3,063,837 + Pf6N2E2_2607 0.46 +1.9
3,063,837 + Pf6N2E2_2607 0.46 +0.1
3,063,837 + Pf6N2E2_2607 0.46 -1.3
3,063,838 - Pf6N2E2_2607 0.46 +0.4
3,063,838 - Pf6N2E2_2607 0.46 -0.1
3,063,838 - Pf6N2E2_2607 0.46 +0.8
3,063,838 - Pf6N2E2_2607 0.46 +0.6
3,063,838 - Pf6N2E2_2607 0.46 -1.5
3,063,838 - Pf6N2E2_2607 0.46 -0.4
3,063,838 - Pf6N2E2_2607 0.46 -0.4
3,063,857 - Pf6N2E2_2607 0.48 -0.3
3,063,937 - Pf6N2E2_2607 0.56 -0.3
3,063,937 - Pf6N2E2_2607 0.56 +0.2
3,063,937 - Pf6N2E2_2607 0.56 +0.5
3,063,979 + Pf6N2E2_2607 0.60 -0.9
3,063,979 + Pf6N2E2_2607 0.60 +0.3
3,063,979 + Pf6N2E2_2607 0.60 -0.0
3,064,010 + Pf6N2E2_2607 0.63 +0.5
3,064,010 + Pf6N2E2_2607 0.63 -1.2

Or see this region's nucleotide sequence