Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2604 and Pf6N2E2_2605 are separated by 83 nucleotides Pf6N2E2_2605 and Pf6N2E2_2606 overlap by 18 nucleotides Pf6N2E2_2606 and Pf6N2E2_2607 are separated by 16 nucleotides
Pf6N2E2_2604 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 3,060,847 to 3,062,139
_2604
Pf6N2E2_2605 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 3,062,223 to 3,063,104
_2605
Pf6N2E2_2606 - hypothetical protein, at 3,063,087 to 3,063,332
_2606
Pf6N2E2_2607 - N-acetylneuraminate synthase (EC 2.5.1.56), at 3,063,349 to 3,064,401
_2607
Position (kb)
3062
3063
3064 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3061.296 kb on - strand, within Pf6N2E2_2604 at 3061.347 kb on + strand, within Pf6N2E2_2604 at 3061.348 kb on - strand, within Pf6N2E2_2604 at 3061.348 kb on - strand, within Pf6N2E2_2604 at 3061.348 kb on - strand, within Pf6N2E2_2604 at 3061.348 kb on - strand, within Pf6N2E2_2604 at 3061.414 kb on - strand, within Pf6N2E2_2604 at 3061.498 kb on - strand, within Pf6N2E2_2604 at 3061.682 kb on + strand, within Pf6N2E2_2604 at 3061.682 kb on + strand, within Pf6N2E2_2604 at 3061.683 kb on - strand, within Pf6N2E2_2604 at 3061.754 kb on + strand, within Pf6N2E2_2604 at 3061.754 kb on + strand, within Pf6N2E2_2604 at 3061.754 kb on + strand, within Pf6N2E2_2604 at 3061.911 kb on - strand, within Pf6N2E2_2604 at 3061.911 kb on - strand, within Pf6N2E2_2604 at 3061.911 kb on - strand, within Pf6N2E2_2604 at 3061.998 kb on + strand, within Pf6N2E2_2604 at 3061.999 kb on - strand, within Pf6N2E2_2604 at 3062.107 kb on + strand at 3062.108 kb on - strand at 3062.170 kb on + strand at 3062.183 kb on + strand at 3062.263 kb on - strand at 3062.337 kb on - strand, within Pf6N2E2_2605 at 3062.337 kb on - strand, within Pf6N2E2_2605 at 3062.785 kb on + strand, within Pf6N2E2_2605 at 3062.786 kb on - strand, within Pf6N2E2_2605 at 3062.786 kb on - strand, within Pf6N2E2_2605 at 3062.795 kb on - strand, within Pf6N2E2_2605 at 3062.795 kb on - strand, within Pf6N2E2_2605 at 3062.800 kb on + strand, within Pf6N2E2_2605 at 3062.801 kb on - strand, within Pf6N2E2_2605 at 3062.822 kb on + strand, within Pf6N2E2_2605 at 3062.823 kb on - strand, within Pf6N2E2_2605 at 3062.823 kb on - strand, within Pf6N2E2_2605 at 3062.823 kb on - strand, within Pf6N2E2_2605 at 3062.844 kb on - strand, within Pf6N2E2_2605 at 3063.094 kb on + strand at 3063.095 kb on - strand at 3063.095 kb on - strand at 3063.095 kb on - strand at 3063.095 kb on - strand at 3063.095 kb on - strand at 3063.122 kb on - strand, within Pf6N2E2_2606 at 3063.122 kb on - strand, within Pf6N2E2_2606 at 3063.138 kb on + strand, within Pf6N2E2_2606 at 3063.139 kb on - strand, within Pf6N2E2_2606 at 3063.178 kb on + strand, within Pf6N2E2_2606 at 3063.224 kb on + strand, within Pf6N2E2_2606 at 3063.224 kb on + strand, within Pf6N2E2_2606 at 3063.225 kb on - strand, within Pf6N2E2_2606 at 3063.225 kb on - strand, within Pf6N2E2_2606 at 3063.233 kb on - strand, within Pf6N2E2_2606 at 3063.276 kb on + strand, within Pf6N2E2_2606 at 3063.276 kb on + strand, within Pf6N2E2_2606 at 3063.276 kb on + strand, within Pf6N2E2_2606 at 3063.276 kb on + strand, within Pf6N2E2_2606 at 3063.276 kb on + strand, within Pf6N2E2_2606 at 3063.277 kb on - strand, within Pf6N2E2_2606 at 3063.277 kb on - strand, within Pf6N2E2_2606 at 3063.277 kb on - strand, within Pf6N2E2_2606 at 3063.277 kb on - strand, within Pf6N2E2_2606 at 3063.281 kb on + strand, within Pf6N2E2_2606 at 3063.281 kb on + strand, within Pf6N2E2_2606 at 3063.281 kb on + strand, within Pf6N2E2_2606 at 3063.282 kb on - strand, within Pf6N2E2_2606 at 3063.282 kb on - strand, within Pf6N2E2_2606 at 3063.282 kb on - strand at 3063.282 kb on - strand, within Pf6N2E2_2606 at 3063.299 kb on + strand, within Pf6N2E2_2606 at 3063.331 kb on - strand at 3063.331 kb on - strand at 3063.480 kb on + strand, within Pf6N2E2_2607 at 3063.515 kb on + strand, within Pf6N2E2_2607 at 3063.516 kb on - strand, within Pf6N2E2_2607 at 3063.516 kb on - strand, within Pf6N2E2_2607 at 3063.531 kb on - strand, within Pf6N2E2_2607 at 3063.566 kb on + strand, within Pf6N2E2_2607 at 3063.566 kb on + strand, within Pf6N2E2_2607 at 3063.567 kb on - strand, within Pf6N2E2_2607 at 3063.778 kb on + strand, within Pf6N2E2_2607 at 3063.778 kb on + strand, within Pf6N2E2_2607 at 3063.778 kb on + strand, within Pf6N2E2_2607 at 3063.779 kb on - strand, within Pf6N2E2_2607 at 3063.798 kb on + strand, within Pf6N2E2_2607 at 3063.798 kb on + strand, within Pf6N2E2_2607 at 3063.799 kb on - strand, within Pf6N2E2_2607 at 3063.833 kb on + strand, within Pf6N2E2_2607 at 3063.834 kb on - strand, within Pf6N2E2_2607 at 3063.837 kb on + strand, within Pf6N2E2_2607 at 3063.837 kb on + strand, within Pf6N2E2_2607 at 3063.837 kb on + strand, within Pf6N2E2_2607 at 3063.838 kb on - strand, within Pf6N2E2_2607 at 3063.838 kb on - strand, within Pf6N2E2_2607 at 3063.838 kb on - strand, within Pf6N2E2_2607 at 3063.838 kb on - strand, within Pf6N2E2_2607 at 3063.838 kb on - strand, within Pf6N2E2_2607 at 3063.838 kb on - strand, within Pf6N2E2_2607 at 3063.838 kb on - strand, within Pf6N2E2_2607 at 3063.857 kb on - strand, within Pf6N2E2_2607 at 3063.937 kb on - strand, within Pf6N2E2_2607 at 3063.937 kb on - strand, within Pf6N2E2_2607 at 3063.937 kb on - strand, within Pf6N2E2_2607 at 3063.979 kb on + strand, within Pf6N2E2_2607 at 3063.979 kb on + strand, within Pf6N2E2_2607 at 3063.979 kb on + strand, within Pf6N2E2_2607 at 3064.010 kb on + strand, within Pf6N2E2_2607 at 3064.010 kb on + strand, within Pf6N2E2_2607
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 3,061,296 - Pf6N2E2_2604 0.35 -0.3 3,061,347 + Pf6N2E2_2604 0.39 -0.1 3,061,348 - Pf6N2E2_2604 0.39 +1.7 3,061,348 - Pf6N2E2_2604 0.39 +0.1 3,061,348 - Pf6N2E2_2604 0.39 +1.0 3,061,348 - Pf6N2E2_2604 0.39 +0.8 3,061,414 - Pf6N2E2_2604 0.44 +0.5 3,061,498 - Pf6N2E2_2604 0.50 -0.0 3,061,682 + Pf6N2E2_2604 0.65 -0.8 3,061,682 + Pf6N2E2_2604 0.65 -0.0 3,061,683 - Pf6N2E2_2604 0.65 -0.3 3,061,754 + Pf6N2E2_2604 0.70 -1.1 3,061,754 + Pf6N2E2_2604 0.70 +0.7 3,061,754 + Pf6N2E2_2604 0.70 -0.6 3,061,911 - Pf6N2E2_2604 0.82 +0.2 3,061,911 - Pf6N2E2_2604 0.82 +1.8 3,061,911 - Pf6N2E2_2604 0.82 +0.2 3,061,998 + Pf6N2E2_2604 0.89 +0.6 3,061,999 - Pf6N2E2_2604 0.89 -1.1 3,062,107 + +0.2 3,062,108 - +1.9 3,062,170 + -0.3 3,062,183 + +0.4 3,062,263 - -1.9 3,062,337 - Pf6N2E2_2605 0.13 -0.3 3,062,337 - Pf6N2E2_2605 0.13 -0.9 3,062,785 + Pf6N2E2_2605 0.64 -1.2 3,062,786 - Pf6N2E2_2605 0.64 -2.7 3,062,786 - Pf6N2E2_2605 0.64 -0.8 3,062,795 - Pf6N2E2_2605 0.65 -2.4 3,062,795 - Pf6N2E2_2605 0.65 -1.9 3,062,800 + Pf6N2E2_2605 0.65 -0.7 3,062,801 - Pf6N2E2_2605 0.66 -0.9 3,062,822 + Pf6N2E2_2605 0.68 +1.0 3,062,823 - Pf6N2E2_2605 0.68 -0.5 3,062,823 - Pf6N2E2_2605 0.68 +0.4 3,062,823 - Pf6N2E2_2605 0.68 -1.0 3,062,844 - Pf6N2E2_2605 0.70 -1.1 3,063,094 + -1.7 3,063,095 - +0.9 3,063,095 - -0.1 3,063,095 - -2.6 3,063,095 - -0.6 3,063,095 - -2.0 3,063,122 - Pf6N2E2_2606 0.14 -1.3 3,063,122 - Pf6N2E2_2606 0.14 -1.3 3,063,138 + Pf6N2E2_2606 0.21 -0.8 3,063,139 - Pf6N2E2_2606 0.21 -2.0 3,063,178 + Pf6N2E2_2606 0.37 -0.5 3,063,224 + Pf6N2E2_2606 0.56 -0.6 3,063,224 + Pf6N2E2_2606 0.56 +0.4 3,063,225 - Pf6N2E2_2606 0.56 -3.0 3,063,225 - Pf6N2E2_2606 0.56 +0.3 3,063,233 - Pf6N2E2_2606 0.59 -0.1 3,063,276 + Pf6N2E2_2606 0.77 -1.4 3,063,276 + Pf6N2E2_2606 0.77 -1.3 3,063,276 + Pf6N2E2_2606 0.77 -0.4 3,063,276 + Pf6N2E2_2606 0.77 -0.3 3,063,276 + Pf6N2E2_2606 0.77 +1.2 3,063,277 - Pf6N2E2_2606 0.77 -1.6 3,063,277 - Pf6N2E2_2606 0.77 +0.1 3,063,277 - Pf6N2E2_2606 0.77 -0.7 3,063,277 - Pf6N2E2_2606 0.77 -0.1 3,063,281 + Pf6N2E2_2606 0.79 -1.3 3,063,281 + Pf6N2E2_2606 0.79 +0.3 3,063,281 + Pf6N2E2_2606 0.79 -0.5 3,063,282 - Pf6N2E2_2606 0.79 -0.8 3,063,282 - Pf6N2E2_2606 0.79 -1.8 3,063,282 - -2.1 3,063,282 - Pf6N2E2_2606 0.79 +0.3 3,063,299 + Pf6N2E2_2606 0.86 -0.7 3,063,331 - +0.2 3,063,331 - +0.7 3,063,480 + Pf6N2E2_2607 0.12 -1.6 3,063,515 + Pf6N2E2_2607 0.16 +1.1 3,063,516 - Pf6N2E2_2607 0.16 +0.2 3,063,516 - Pf6N2E2_2607 0.16 +0.0 3,063,531 - Pf6N2E2_2607 0.17 -0.1 3,063,566 + Pf6N2E2_2607 0.21 +1.9 3,063,566 + Pf6N2E2_2607 0.21 +0.3 3,063,567 - Pf6N2E2_2607 0.21 +0.1 3,063,778 + Pf6N2E2_2607 0.41 -0.1 3,063,778 + Pf6N2E2_2607 0.41 -1.0 3,063,778 + Pf6N2E2_2607 0.41 -0.5 3,063,779 - Pf6N2E2_2607 0.41 +0.3 3,063,798 + Pf6N2E2_2607 0.43 +0.3 3,063,798 + Pf6N2E2_2607 0.43 -0.2 3,063,799 - Pf6N2E2_2607 0.43 +0.5 3,063,833 + Pf6N2E2_2607 0.46 +0.4 3,063,834 - Pf6N2E2_2607 0.46 -0.1 3,063,837 + Pf6N2E2_2607 0.46 +1.9 3,063,837 + Pf6N2E2_2607 0.46 +0.1 3,063,837 + Pf6N2E2_2607 0.46 -1.3 3,063,838 - Pf6N2E2_2607 0.46 +0.4 3,063,838 - Pf6N2E2_2607 0.46 -0.1 3,063,838 - Pf6N2E2_2607 0.46 +0.8 3,063,838 - Pf6N2E2_2607 0.46 +0.6 3,063,838 - Pf6N2E2_2607 0.46 -1.5 3,063,838 - Pf6N2E2_2607 0.46 -0.4 3,063,838 - Pf6N2E2_2607 0.46 -0.4 3,063,857 - Pf6N2E2_2607 0.48 -0.3 3,063,937 - Pf6N2E2_2607 0.56 -0.3 3,063,937 - Pf6N2E2_2607 0.56 +0.2 3,063,937 - Pf6N2E2_2607 0.56 +0.5 3,063,979 + Pf6N2E2_2607 0.60 -0.9 3,063,979 + Pf6N2E2_2607 0.60 +0.3 3,063,979 + Pf6N2E2_2607 0.60 -0.0 3,064,010 + Pf6N2E2_2607 0.63 +0.5 3,064,010 + Pf6N2E2_2607 0.63 -1.2
Or see this region's nucleotide sequence