Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2289

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2287 and Pf6N2E2_2288 are separated by 115 nucleotidesPf6N2E2_2288 and Pf6N2E2_2289 are separated by 108 nucleotidesPf6N2E2_2289 and Pf6N2E2_2290 are separated by 54 nucleotides Pf6N2E2_2287 - DNA topoisomerase I (EC 5.99.1.2), at 2,704,969 to 2,707,581 _2287 Pf6N2E2_2288 - FIG00953423: hypothetical protein, at 2,707,697 to 2,707,933 _2288 Pf6N2E2_2289 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 2,708,042 to 2,709,193 _2289 Pf6N2E2_2290 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 2,709,248 to 2,711,395 _2290 Position (kb) 2708 2709 2710Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2707.644 kb on - strandat 2707.644 kb on - strandat 2707.644 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.648 kb on - strandat 2707.650 kb on - strandat 2707.650 kb on - strandat 2707.650 kb on - strandat 2707.650 kb on - strandat 2707.833 kb on + strand, within Pf6N2E2_2288at 2707.880 kb on + strand, within Pf6N2E2_2288at 2707.902 kb on + strand, within Pf6N2E2_2288at 2707.902 kb on + strand, within Pf6N2E2_2288at 2707.903 kb on - strand, within Pf6N2E2_2288at 2707.903 kb on - strand, within Pf6N2E2_2288at 2707.903 kb on - strand, within Pf6N2E2_2288at 2707.903 kb on - strand, within Pf6N2E2_2288at 2707.911 kb on + strandat 2707.925 kb on + strandat 2707.925 kb on + strandat 2707.926 kb on - strandat 2707.982 kb on - strandat 2707.984 kb on + strandat 2707.985 kb on - strandat 2707.985 kb on - strandat 2708.043 kb on + strandat 2708.044 kb on - strandat 2708.044 kb on - strandat 2708.362 kb on - strand, within Pf6N2E2_2289at 2708.791 kb on - strand, within Pf6N2E2_2289at 2709.203 kb on - strandat 2709.217 kb on + strandat 2709.218 kb on - strandat 2709.218 kb on - strandat 2709.218 kb on - strandat 2709.218 kb on - strandat 2709.218 kb on - strandat 2709.218 kb on - strandat 2709.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,707,644 - -0.1
2,707,644 - +1.3
2,707,644 - +1.0
2,707,646 - -0.1
2,707,646 - +1.4
2,707,646 - +0.2
2,707,646 - -1.2
2,707,646 - +0.9
2,707,646 - +0.7
2,707,646 - +0.6
2,707,646 - +1.7
2,707,646 - +0.5
2,707,646 - +2.5
2,707,646 - +0.9
2,707,646 - -0.1
2,707,646 - -0.2
2,707,646 - -1.3
2,707,646 - +0.2
2,707,646 - +0.6
2,707,646 - -0.8
2,707,646 - +0.3
2,707,646 - +1.2
2,707,646 - +1.4
2,707,648 - +1.3
2,707,648 - +0.2
2,707,648 - -0.0
2,707,648 - +0.6
2,707,648 - +1.4
2,707,648 - -0.8
2,707,648 - +1.9
2,707,648 - -0.2
2,707,648 - -1.9
2,707,648 - -0.6
2,707,648 - +0.0
2,707,648 - -0.5
2,707,648 - +0.3
2,707,648 - +1.7
2,707,648 - +0.7
2,707,650 - -0.2
2,707,650 - +0.4
2,707,650 - -0.3
2,707,650 - +0.2
2,707,833 + Pf6N2E2_2288 0.57 -0.8
2,707,880 + Pf6N2E2_2288 0.77 -0.6
2,707,902 + Pf6N2E2_2288 0.86 -1.3
2,707,902 + Pf6N2E2_2288 0.86 -0.8
2,707,903 - Pf6N2E2_2288 0.87 +0.4
2,707,903 - Pf6N2E2_2288 0.87 +2.1
2,707,903 - Pf6N2E2_2288 0.87 +1.5
2,707,903 - Pf6N2E2_2288 0.87 -0.2
2,707,911 + -0.5
2,707,925 + +1.0
2,707,925 + -1.5
2,707,926 - -0.3
2,707,982 - -0.2
2,707,984 + +0.6
2,707,985 - -1.6
2,707,985 - +0.9
2,708,043 + +0.9
2,708,044 - -0.1
2,708,044 - +0.3
2,708,362 - Pf6N2E2_2289 0.28 -1.2
2,708,791 - Pf6N2E2_2289 0.65 -1.3
2,709,203 - -4.2
2,709,217 + -2.5
2,709,218 - -1.3
2,709,218 - -2.6
2,709,218 - -2.1
2,709,218 - -2.1
2,709,218 - +1.4
2,709,218 - -0.2
2,709,376 - +0.7

Or see this region's nucleotide sequence