Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2044 and Pf6N2E2_2045 are separated by 48 nucleotides Pf6N2E2_2045 and Pf6N2E2_2046 are separated by 198 nucleotides
Pf6N2E2_2044 - Histidine kinase/response regulator hybrid protein, at 2,434,800 to 2,437,337
_2044
Pf6N2E2_2045 - Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8), at 2,437,386 to 2,437,661
_2045
Pf6N2E2_2046 - 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45), at 2,437,860 to 2,438,777
_2046
Position (kb)
2437
2438 Strain fitness (log2 ratio)
-2
-1
0
1 at 2436.639 kb on + strand, within Pf6N2E2_2044 at 2436.640 kb on - strand, within Pf6N2E2_2044 at 2436.690 kb on + strand, within Pf6N2E2_2044 at 2436.690 kb on + strand, within Pf6N2E2_2044 at 2436.691 kb on - strand, within Pf6N2E2_2044 at 2436.892 kb on - strand, within Pf6N2E2_2044 at 2436.892 kb on - strand, within Pf6N2E2_2044 at 2437.347 kb on + strand at 2437.347 kb on + strand at 2437.348 kb on - strand at 2437.348 kb on - strand at 2437.348 kb on - strand at 2437.492 kb on - strand, within Pf6N2E2_2045 at 2437.537 kb on + strand, within Pf6N2E2_2045 at 2437.538 kb on - strand, within Pf6N2E2_2045 at 2437.651 kb on - strand at 2437.970 kb on - strand, within Pf6N2E2_2046 at 2438.041 kb on + strand, within Pf6N2E2_2046 at 2438.041 kb on + strand, within Pf6N2E2_2046 at 2438.041 kb on + strand, within Pf6N2E2_2046 at 2438.042 kb on - strand, within Pf6N2E2_2046 at 2438.042 kb on - strand, within Pf6N2E2_2046 at 2438.092 kb on - strand, within Pf6N2E2_2046 at 2438.120 kb on - strand, within Pf6N2E2_2046 at 2438.120 kb on - strand, within Pf6N2E2_2046 at 2438.176 kb on - strand, within Pf6N2E2_2046 at 2438.200 kb on + strand, within Pf6N2E2_2046 at 2438.219 kb on - strand, within Pf6N2E2_2046 at 2438.375 kb on - strand, within Pf6N2E2_2046 at 2438.375 kb on - strand, within Pf6N2E2_2046 at 2438.430 kb on - strand, within Pf6N2E2_2046 at 2438.465 kb on - strand, within Pf6N2E2_2046 at 2438.506 kb on + strand, within Pf6N2E2_2046 at 2438.507 kb on - strand, within Pf6N2E2_2046 at 2438.507 kb on - strand, within Pf6N2E2_2046 at 2438.507 kb on - strand, within Pf6N2E2_2046 at 2438.507 kb on - strand, within Pf6N2E2_2046 at 2438.620 kb on + strand, within Pf6N2E2_2046 at 2438.660 kb on - strand, within Pf6N2E2_2046
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,436,639 + Pf6N2E2_2044 0.72 -2.6 2,436,640 - Pf6N2E2_2044 0.72 +0.3 2,436,690 + Pf6N2E2_2044 0.74 +0.4 2,436,690 + Pf6N2E2_2044 0.74 +0.1 2,436,691 - Pf6N2E2_2044 0.75 +0.2 2,436,892 - Pf6N2E2_2044 0.82 +0.3 2,436,892 - Pf6N2E2_2044 0.82 +0.2 2,437,347 + -0.7 2,437,347 + +1.6 2,437,348 - -0.7 2,437,348 - -0.1 2,437,348 - +0.5 2,437,492 - Pf6N2E2_2045 0.38 -1.2 2,437,537 + Pf6N2E2_2045 0.55 -0.2 2,437,538 - Pf6N2E2_2045 0.55 -0.9 2,437,651 - -1.4 2,437,970 - Pf6N2E2_2046 0.12 +0.8 2,438,041 + Pf6N2E2_2046 0.20 +0.8 2,438,041 + Pf6N2E2_2046 0.20 +0.7 2,438,041 + Pf6N2E2_2046 0.20 -1.3 2,438,042 - Pf6N2E2_2046 0.20 -0.1 2,438,042 - Pf6N2E2_2046 0.20 -0.6 2,438,092 - Pf6N2E2_2046 0.25 -0.4 2,438,120 - Pf6N2E2_2046 0.28 -1.4 2,438,120 - Pf6N2E2_2046 0.28 +1.6 2,438,176 - Pf6N2E2_2046 0.34 +0.6 2,438,200 + Pf6N2E2_2046 0.37 -0.2 2,438,219 - Pf6N2E2_2046 0.39 -0.9 2,438,375 - Pf6N2E2_2046 0.56 +0.1 2,438,375 - Pf6N2E2_2046 0.56 -0.5 2,438,430 - Pf6N2E2_2046 0.62 -0.7 2,438,465 - Pf6N2E2_2046 0.66 -1.9 2,438,506 + Pf6N2E2_2046 0.70 -1.2 2,438,507 - Pf6N2E2_2046 0.70 +0.3 2,438,507 - Pf6N2E2_2046 0.70 -0.2 2,438,507 - Pf6N2E2_2046 0.70 -0.2 2,438,507 - Pf6N2E2_2046 0.70 +0.7 2,438,620 + Pf6N2E2_2046 0.83 +1.6 2,438,660 - Pf6N2E2_2046 0.87 -0.4
Or see this region's nucleotide sequence