Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2045

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2044 and Pf6N2E2_2045 are separated by 48 nucleotidesPf6N2E2_2045 and Pf6N2E2_2046 are separated by 198 nucleotides Pf6N2E2_2044 - Histidine kinase/response regulator hybrid protein, at 2,434,800 to 2,437,337 _2044 Pf6N2E2_2045 - Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8), at 2,437,386 to 2,437,661 _2045 Pf6N2E2_2046 - 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45), at 2,437,860 to 2,438,777 _2046 Position (kb) 2437 2438Strain fitness (log2 ratio) -2 -1 0 1at 2436.639 kb on + strand, within Pf6N2E2_2044at 2436.640 kb on - strand, within Pf6N2E2_2044at 2436.690 kb on + strand, within Pf6N2E2_2044at 2436.690 kb on + strand, within Pf6N2E2_2044at 2436.691 kb on - strand, within Pf6N2E2_2044at 2436.892 kb on - strand, within Pf6N2E2_2044at 2436.892 kb on - strand, within Pf6N2E2_2044at 2437.347 kb on + strandat 2437.347 kb on + strandat 2437.348 kb on - strandat 2437.348 kb on - strandat 2437.348 kb on - strandat 2437.492 kb on - strand, within Pf6N2E2_2045at 2437.537 kb on + strand, within Pf6N2E2_2045at 2437.538 kb on - strand, within Pf6N2E2_2045at 2437.651 kb on - strandat 2437.970 kb on - strand, within Pf6N2E2_2046at 2438.041 kb on + strand, within Pf6N2E2_2046at 2438.041 kb on + strand, within Pf6N2E2_2046at 2438.041 kb on + strand, within Pf6N2E2_2046at 2438.042 kb on - strand, within Pf6N2E2_2046at 2438.042 kb on - strand, within Pf6N2E2_2046at 2438.092 kb on - strand, within Pf6N2E2_2046at 2438.120 kb on - strand, within Pf6N2E2_2046at 2438.120 kb on - strand, within Pf6N2E2_2046at 2438.176 kb on - strand, within Pf6N2E2_2046at 2438.200 kb on + strand, within Pf6N2E2_2046at 2438.219 kb on - strand, within Pf6N2E2_2046at 2438.375 kb on - strand, within Pf6N2E2_2046at 2438.375 kb on - strand, within Pf6N2E2_2046at 2438.430 kb on - strand, within Pf6N2E2_2046at 2438.465 kb on - strand, within Pf6N2E2_2046at 2438.506 kb on + strand, within Pf6N2E2_2046at 2438.507 kb on - strand, within Pf6N2E2_2046at 2438.507 kb on - strand, within Pf6N2E2_2046at 2438.507 kb on - strand, within Pf6N2E2_2046at 2438.507 kb on - strand, within Pf6N2E2_2046at 2438.620 kb on + strand, within Pf6N2E2_2046at 2438.660 kb on - strand, within Pf6N2E2_2046

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,436,639 + Pf6N2E2_2044 0.72 -2.6
2,436,640 - Pf6N2E2_2044 0.72 +0.3
2,436,690 + Pf6N2E2_2044 0.74 +0.4
2,436,690 + Pf6N2E2_2044 0.74 +0.1
2,436,691 - Pf6N2E2_2044 0.75 +0.2
2,436,892 - Pf6N2E2_2044 0.82 +0.3
2,436,892 - Pf6N2E2_2044 0.82 +0.2
2,437,347 + -0.7
2,437,347 + +1.6
2,437,348 - -0.7
2,437,348 - -0.1
2,437,348 - +0.5
2,437,492 - Pf6N2E2_2045 0.38 -1.2
2,437,537 + Pf6N2E2_2045 0.55 -0.2
2,437,538 - Pf6N2E2_2045 0.55 -0.9
2,437,651 - -1.4
2,437,970 - Pf6N2E2_2046 0.12 +0.8
2,438,041 + Pf6N2E2_2046 0.20 +0.8
2,438,041 + Pf6N2E2_2046 0.20 +0.7
2,438,041 + Pf6N2E2_2046 0.20 -1.3
2,438,042 - Pf6N2E2_2046 0.20 -0.1
2,438,042 - Pf6N2E2_2046 0.20 -0.6
2,438,092 - Pf6N2E2_2046 0.25 -0.4
2,438,120 - Pf6N2E2_2046 0.28 -1.4
2,438,120 - Pf6N2E2_2046 0.28 +1.6
2,438,176 - Pf6N2E2_2046 0.34 +0.6
2,438,200 + Pf6N2E2_2046 0.37 -0.2
2,438,219 - Pf6N2E2_2046 0.39 -0.9
2,438,375 - Pf6N2E2_2046 0.56 +0.1
2,438,375 - Pf6N2E2_2046 0.56 -0.5
2,438,430 - Pf6N2E2_2046 0.62 -0.7
2,438,465 - Pf6N2E2_2046 0.66 -1.9
2,438,506 + Pf6N2E2_2046 0.70 -1.2
2,438,507 - Pf6N2E2_2046 0.70 +0.3
2,438,507 - Pf6N2E2_2046 0.70 -0.2
2,438,507 - Pf6N2E2_2046 0.70 -0.2
2,438,507 - Pf6N2E2_2046 0.70 +0.7
2,438,620 + Pf6N2E2_2046 0.83 +1.6
2,438,660 - Pf6N2E2_2046 0.87 -0.4

Or see this region's nucleotide sequence