Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1033 and Pf6N2E2_1034 are separated by 46 nucleotides Pf6N2E2_1034 and Pf6N2E2_1035 are separated by 84 nucleotides Pf6N2E2_1035 and Pf6N2E2_1036 are separated by 1 nucleotides
Pf6N2E2_1033 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,207,062 to 1,208,087
_1033
Pf6N2E2_1034 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,208,134 to 1,208,943
_1034
Pf6N2E2_1035 - MotA/TolQ/ExbB proton channel family protein, at 1,209,028 to 1,209,753
_1035
Pf6N2E2_1036 - Biopolymer transport protein ExbD/TolR, at 1,209,755 to 1,210,156
_1036
Position (kb)
1208
1209 Strain fitness (log2 ratio)
-2
-1
0
1 at 1207.263 kb on + strand, within Pf6N2E2_1033 at 1207.264 kb on - strand, within Pf6N2E2_1033 at 1207.264 kb on - strand, within Pf6N2E2_1033 at 1207.528 kb on - strand, within Pf6N2E2_1033 at 1207.846 kb on - strand, within Pf6N2E2_1033 at 1207.927 kb on + strand, within Pf6N2E2_1033 at 1208.119 kb on + strand at 1208.120 kb on - strand at 1208.120 kb on - strand at 1208.395 kb on - strand, within Pf6N2E2_1034 at 1208.689 kb on + strand, within Pf6N2E2_1034 at 1208.942 kb on - strand at 1209.587 kb on - strand, within Pf6N2E2_1035 at 1209.592 kb on + strand, within Pf6N2E2_1035 at 1209.592 kb on + strand, within Pf6N2E2_1035 at 1209.592 kb on + strand, within Pf6N2E2_1035 at 1209.592 kb on + strand, within Pf6N2E2_1035 at 1209.593 kb on - strand, within Pf6N2E2_1035 at 1209.653 kb on - strand, within Pf6N2E2_1035 at 1209.653 kb on - strand, within Pf6N2E2_1035 at 1209.823 kb on + strand, within Pf6N2E2_1036 at 1209.823 kb on + strand, within Pf6N2E2_1036 at 1209.823 kb on + strand, within Pf6N2E2_1036 at 1209.823 kb on + strand, within Pf6N2E2_1036 at 1209.824 kb on - strand, within Pf6N2E2_1036 at 1209.824 kb on - strand, within Pf6N2E2_1036
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,207,263 + Pf6N2E2_1033 0.20 +0.1 1,207,264 - Pf6N2E2_1033 0.20 -0.5 1,207,264 - Pf6N2E2_1033 0.20 +0.3 1,207,528 - Pf6N2E2_1033 0.45 +1.4 1,207,846 - Pf6N2E2_1033 0.76 +0.5 1,207,927 + Pf6N2E2_1033 0.84 -0.3 1,208,119 + +0.1 1,208,120 - -1.7 1,208,120 - -2.0 1,208,395 - Pf6N2E2_1034 0.32 -1.1 1,208,689 + Pf6N2E2_1034 0.69 -1.0 1,208,942 - +0.9 1,209,587 - Pf6N2E2_1035 0.77 -0.7 1,209,592 + Pf6N2E2_1035 0.78 +1.1 1,209,592 + Pf6N2E2_1035 0.78 -0.1 1,209,592 + Pf6N2E2_1035 0.78 +1.4 1,209,592 + Pf6N2E2_1035 0.78 +0.7 1,209,593 - Pf6N2E2_1035 0.78 +0.1 1,209,653 - Pf6N2E2_1035 0.86 -0.1 1,209,653 - Pf6N2E2_1035 0.86 -0.4 1,209,823 + Pf6N2E2_1036 0.17 -0.1 1,209,823 + Pf6N2E2_1036 0.17 +0.6 1,209,823 + Pf6N2E2_1036 0.17 -0.5 1,209,823 + Pf6N2E2_1036 0.17 -1.0 1,209,824 - Pf6N2E2_1036 0.17 +0.6 1,209,824 - Pf6N2E2_1036 0.17 +1.4
Or see this region's nucleotide sequence