Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1034

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1033 and Pf6N2E2_1034 are separated by 46 nucleotidesPf6N2E2_1034 and Pf6N2E2_1035 are separated by 84 nucleotidesPf6N2E2_1035 and Pf6N2E2_1036 are separated by 1 nucleotides Pf6N2E2_1033 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,207,062 to 1,208,087 _1033 Pf6N2E2_1034 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,208,134 to 1,208,943 _1034 Pf6N2E2_1035 - MotA/TolQ/ExbB proton channel family protein, at 1,209,028 to 1,209,753 _1035 Pf6N2E2_1036 - Biopolymer transport protein ExbD/TolR, at 1,209,755 to 1,210,156 _1036 Position (kb) 1208 1209Strain fitness (log2 ratio) -2 -1 0 1at 1207.263 kb on + strand, within Pf6N2E2_1033at 1207.264 kb on - strand, within Pf6N2E2_1033at 1207.264 kb on - strand, within Pf6N2E2_1033at 1207.528 kb on - strand, within Pf6N2E2_1033at 1207.846 kb on - strand, within Pf6N2E2_1033at 1207.927 kb on + strand, within Pf6N2E2_1033at 1208.119 kb on + strandat 1208.120 kb on - strandat 1208.120 kb on - strandat 1208.395 kb on - strand, within Pf6N2E2_1034at 1208.689 kb on + strand, within Pf6N2E2_1034at 1208.942 kb on - strandat 1209.587 kb on - strand, within Pf6N2E2_1035at 1209.592 kb on + strand, within Pf6N2E2_1035at 1209.592 kb on + strand, within Pf6N2E2_1035at 1209.592 kb on + strand, within Pf6N2E2_1035at 1209.592 kb on + strand, within Pf6N2E2_1035at 1209.593 kb on - strand, within Pf6N2E2_1035at 1209.653 kb on - strand, within Pf6N2E2_1035at 1209.653 kb on - strand, within Pf6N2E2_1035at 1209.823 kb on + strand, within Pf6N2E2_1036at 1209.823 kb on + strand, within Pf6N2E2_1036at 1209.823 kb on + strand, within Pf6N2E2_1036at 1209.823 kb on + strand, within Pf6N2E2_1036at 1209.824 kb on - strand, within Pf6N2E2_1036at 1209.824 kb on - strand, within Pf6N2E2_1036

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,207,263 + Pf6N2E2_1033 0.20 +0.1
1,207,264 - Pf6N2E2_1033 0.20 -0.5
1,207,264 - Pf6N2E2_1033 0.20 +0.3
1,207,528 - Pf6N2E2_1033 0.45 +1.4
1,207,846 - Pf6N2E2_1033 0.76 +0.5
1,207,927 + Pf6N2E2_1033 0.84 -0.3
1,208,119 + +0.1
1,208,120 - -1.7
1,208,120 - -2.0
1,208,395 - Pf6N2E2_1034 0.32 -1.1
1,208,689 + Pf6N2E2_1034 0.69 -1.0
1,208,942 - +0.9
1,209,587 - Pf6N2E2_1035 0.77 -0.7
1,209,592 + Pf6N2E2_1035 0.78 +1.1
1,209,592 + Pf6N2E2_1035 0.78 -0.1
1,209,592 + Pf6N2E2_1035 0.78 +1.4
1,209,592 + Pf6N2E2_1035 0.78 +0.7
1,209,593 - Pf6N2E2_1035 0.78 +0.1
1,209,653 - Pf6N2E2_1035 0.86 -0.1
1,209,653 - Pf6N2E2_1035 0.86 -0.4
1,209,823 + Pf6N2E2_1036 0.17 -0.1
1,209,823 + Pf6N2E2_1036 0.17 +0.6
1,209,823 + Pf6N2E2_1036 0.17 -0.5
1,209,823 + Pf6N2E2_1036 0.17 -1.0
1,209,824 - Pf6N2E2_1036 0.17 +0.6
1,209,824 - Pf6N2E2_1036 0.17 +1.4

Or see this region's nucleotide sequence