Strain Fitness in Marinobacter adhaerens HP15 around HP15_3384

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3383 and HP15_3384 are separated by 41 nucleotidesHP15_3384 and HP15_3385 are separated by 152 nucleotidesHP15_3385 and HP15_3386 are separated by 18 nucleotides HP15_3383: HP15_3383 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 3,551,562 to 3,552,857 _3383 HP15_3384: HP15_3384 - HIT (histidine triad) family protein, at 3,552,899 to 3,553,264 _3384 HP15_3385: HP15_3385 - phosphate uptake regulator, PhoU, at 3,553,417 to 3,554,154 _3385 HP15_3386: HP15_3386 - phosphate ABC transporter, ATPase subunit, at 3,554,173 to 3,555,051 _3386 Position (kb) 3552 3553 3554Strain fitness (log2 ratio) -1 0 1at 3552.801 kb on - strandat 3552.849 kb on - strandat 3552.979 kb on - strand, within HP15_3384at 3552.980 kb on - strand, within HP15_3384at 3553.086 kb on - strand, within HP15_3384at 3553.151 kb on + strand, within HP15_3384at 3553.220 kb on + strand, within HP15_3384at 3553.220 kb on + strand, within HP15_3384at 3553.228 kb on - strandat 3553.228 kb on - strandat 3553.278 kb on + strandat 3553.320 kb on + strandat 3553.361 kb on - strandat 3553.398 kb on + strandat 3553.410 kb on + strandat 3554.164 kb on + strandat 3554.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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3,552,801 - -0.7
3,552,849 - +0.9
3,552,979 - HP15_3384 0.22 -0.8
3,552,980 - HP15_3384 0.22 -1.0
3,553,086 - HP15_3384 0.51 -0.6
3,553,151 + HP15_3384 0.69 -0.9
3,553,220 + HP15_3384 0.88 +0.4
3,553,220 + HP15_3384 0.88 -0.8
3,553,228 - -0.7
3,553,228 - -0.4
3,553,278 + +0.7
3,553,320 + +0.0
3,553,361 - +0.3
3,553,398 + -0.2
3,553,410 + -0.4
3,554,164 + -0.8
3,554,172 - -0.2

Or see this region's nucleotide sequence