Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2325 and HP15_2326 overlap by 8 nucleotides HP15_2326 and HP15_2327 are separated by 15 nucleotides HP15_2327 and HP15_2328 are separated by 251 nucleotides
HP15_2325: HP15_2325 - flagellar motor switch protein G, at 2,443,839 to 2,444,882
_2325
HP15_2326: HP15_2326 - flagellar MS-ring protein, at 2,444,875 to 2,446,584
_2326
HP15_2327: HP15_2327 - flagellar hook-basal body complex protein FliE, at 2,446,600 to 2,446,968
_2327
HP15_2328: HP15_2328 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,447,220 to 2,448,686
_2328
Position (kb)
2444
2445
2446
2447 Strain fitness (log2 ratio)
-1
0
1 at 2443.896 kb on - strand at 2443.927 kb on + strand at 2443.955 kb on - strand, within HP15_2325 at 2444.063 kb on + strand, within HP15_2325 at 2444.071 kb on - strand, within HP15_2325 at 2444.075 kb on + strand, within HP15_2325 at 2444.113 kb on + strand, within HP15_2325 at 2444.121 kb on - strand, within HP15_2325 at 2444.136 kb on + strand, within HP15_2325 at 2444.144 kb on - strand, within HP15_2325 at 2444.691 kb on + strand, within HP15_2325 at 2444.736 kb on - strand, within HP15_2325 at 2444.851 kb on + strand at 2444.966 kb on + strand at 2444.966 kb on + strand at 2445.025 kb on - strand at 2445.040 kb on - strand at 2445.113 kb on + strand, within HP15_2326 at 2445.126 kb on - strand, within HP15_2326 at 2445.214 kb on - strand, within HP15_2326 at 2445.224 kb on - strand, within HP15_2326 at 2445.224 kb on - strand, within HP15_2326 at 2445.320 kb on + strand, within HP15_2326 at 2445.443 kb on + strand, within HP15_2326 at 2445.651 kb on + strand, within HP15_2326 at 2445.659 kb on - strand, within HP15_2326 at 2445.686 kb on - strand, within HP15_2326 at 2445.778 kb on - strand, within HP15_2326 at 2445.846 kb on + strand, within HP15_2326 at 2445.928 kb on - strand, within HP15_2326 at 2446.039 kb on + strand, within HP15_2326 at 2446.039 kb on + strand, within HP15_2326 at 2446.039 kb on + strand, within HP15_2326 at 2446.125 kb on + strand, within HP15_2326 at 2446.195 kb on - strand, within HP15_2326 at 2446.316 kb on + strand, within HP15_2326 at 2446.408 kb on + strand, within HP15_2326 at 2446.465 kb on - strand at 2446.475 kb on + strand at 2446.526 kb on + strand at 2446.526 kb on + strand at 2446.587 kb on - strand at 2446.587 kb on - strand at 2446.638 kb on - strand, within HP15_2327 at 2446.682 kb on - strand, within HP15_2327 at 2446.708 kb on + strand, within HP15_2327 at 2446.716 kb on - strand, within HP15_2327 at 2446.817 kb on - strand, within HP15_2327 at 2446.823 kb on - strand, within HP15_2327 at 2446.882 kb on - strand, within HP15_2327 at 2446.890 kb on + strand, within HP15_2327 at 2446.900 kb on - strand, within HP15_2327 at 2446.945 kb on + strand at 2446.951 kb on - strand at 2446.978 kb on - strand at 2447.223 kb on + strand at 2447.231 kb on - strand at 2447.276 kb on + strand at 2447.395 kb on - strand, within HP15_2328 at 2447.448 kb on - strand, within HP15_2328 at 2447.499 kb on - strand, within HP15_2328 at 2447.535 kb on + strand, within HP15_2328 at 2447.538 kb on - strand, within HP15_2328 at 2447.540 kb on + strand, within HP15_2328 at 2447.540 kb on + strand, within HP15_2328 at 2447.548 kb on - strand, within HP15_2328 at 2447.548 kb on - strand, within HP15_2328
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 2,443,896 - +0.1 2,443,927 + +0.1 2,443,955 - HP15_2325 0.11 +0.5 2,444,063 + HP15_2325 0.21 +0.2 2,444,071 - HP15_2325 0.22 -1.4 2,444,075 + HP15_2325 0.23 +0.4 2,444,113 + HP15_2325 0.26 -0.4 2,444,121 - HP15_2325 0.27 -0.4 2,444,136 + HP15_2325 0.28 -0.2 2,444,144 - HP15_2325 0.29 +0.5 2,444,691 + HP15_2325 0.82 +0.1 2,444,736 - HP15_2325 0.86 -0.4 2,444,851 + +0.6 2,444,966 + +0.4 2,444,966 + -0.5 2,445,025 - +0.8 2,445,040 - +0.2 2,445,113 + HP15_2326 0.14 +0.4 2,445,126 - HP15_2326 0.15 +0.4 2,445,214 - HP15_2326 0.20 +0.3 2,445,224 - HP15_2326 0.20 +0.2 2,445,224 - HP15_2326 0.20 +1.0 2,445,320 + HP15_2326 0.26 +0.9 2,445,443 + HP15_2326 0.33 +0.1 2,445,651 + HP15_2326 0.45 +0.1 2,445,659 - HP15_2326 0.46 +0.8 2,445,686 - HP15_2326 0.47 +1.2 2,445,778 - HP15_2326 0.53 +0.4 2,445,846 + HP15_2326 0.57 +0.7 2,445,928 - HP15_2326 0.62 +0.6 2,446,039 + HP15_2326 0.68 +0.3 2,446,039 + HP15_2326 0.68 -0.0 2,446,039 + HP15_2326 0.68 +0.4 2,446,125 + HP15_2326 0.73 +0.1 2,446,195 - HP15_2326 0.77 +0.5 2,446,316 + HP15_2326 0.84 +0.3 2,446,408 + HP15_2326 0.90 +0.2 2,446,465 - +0.7 2,446,475 + +1.3 2,446,526 + +0.6 2,446,526 + +0.2 2,446,587 - +0.6 2,446,587 - +1.5 2,446,638 - HP15_2327 0.10 -0.2 2,446,682 - HP15_2327 0.22 +0.3 2,446,708 + HP15_2327 0.29 +0.7 2,446,716 - HP15_2327 0.31 +0.5 2,446,817 - HP15_2327 0.59 -0.2 2,446,823 - HP15_2327 0.60 +0.1 2,446,882 - HP15_2327 0.76 +0.0 2,446,890 + HP15_2327 0.79 +0.6 2,446,900 - HP15_2327 0.81 +0.4 2,446,945 + +0.7 2,446,951 - -0.2 2,446,978 - +1.4 2,447,223 + +0.7 2,447,231 - +0.0 2,447,276 + +0.3 2,447,395 - HP15_2328 0.12 +0.2 2,447,448 - HP15_2328 0.16 -0.4 2,447,499 - HP15_2328 0.19 -0.1 2,447,535 + HP15_2328 0.21 +1.6 2,447,538 - HP15_2328 0.22 +0.4 2,447,540 + HP15_2328 0.22 -0.4 2,447,540 + HP15_2328 0.22 +0.4 2,447,548 - HP15_2328 0.22 -0.0 2,447,548 - HP15_2328 0.22 +0.5
Or see this region's nucleotide sequence