Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1584 and HP15_1585 are separated by 183 nucleotides HP15_1585 and HP15_1586 are separated by 6 nucleotides
HP15_1584: HP15_1584 - conserved hypothetical protein, at 1,674,490 to 1,675,980
_1584
HP15_1585: HP15_1585 - oxidoreductase, FAD/FMN-binding protein, at 1,676,164 to 1,678,614
_1585
HP15_1586: HP15_1586 - oxidoreductase N-terminal domain-containing protein, at 1,678,621 to 1,679,667
_1586
Position (kb)
1676
1677
1678
1679 Strain fitness (log2 ratio)
-1
0
1 at 1675.232 kb on + strand, within HP15_1584 at 1675.242 kb on + strand, within HP15_1584 at 1675.291 kb on - strand, within HP15_1584 at 1675.391 kb on - strand, within HP15_1584 at 1675.396 kb on + strand, within HP15_1584 at 1675.409 kb on - strand, within HP15_1584 at 1675.516 kb on + strand, within HP15_1584 at 1675.517 kb on + strand, within HP15_1584 at 1675.668 kb on + strand, within HP15_1584 at 1675.671 kb on - strand, within HP15_1584 at 1675.676 kb on - strand, within HP15_1584 at 1675.713 kb on - strand, within HP15_1584 at 1675.753 kb on - strand, within HP15_1584 at 1676.028 kb on + strand at 1676.041 kb on - strand at 1676.120 kb on - strand at 1676.120 kb on - strand at 1676.413 kb on - strand, within HP15_1585 at 1676.504 kb on - strand, within HP15_1585 at 1676.565 kb on + strand, within HP15_1585 at 1676.839 kb on + strand, within HP15_1585 at 1676.845 kb on + strand, within HP15_1585 at 1676.847 kb on - strand, within HP15_1585 at 1676.847 kb on - strand, within HP15_1585 at 1676.982 kb on + strand, within HP15_1585 at 1676.982 kb on + strand, within HP15_1585 at 1676.982 kb on + strand, within HP15_1585 at 1676.982 kb on + strand, within HP15_1585 at 1676.990 kb on - strand, within HP15_1585 at 1677.120 kb on + strand, within HP15_1585 at 1677.151 kb on - strand, within HP15_1585 at 1677.182 kb on - strand, within HP15_1585 at 1677.304 kb on + strand, within HP15_1585 at 1677.734 kb on + strand, within HP15_1585 at 1677.735 kb on - strand, within HP15_1585 at 1677.992 kb on + strand, within HP15_1585 at 1678.026 kb on - strand, within HP15_1585 at 1678.036 kb on - strand, within HP15_1585 at 1678.053 kb on + strand, within HP15_1585 at 1678.178 kb on + strand, within HP15_1585 at 1678.184 kb on - strand, within HP15_1585 at 1678.388 kb on - strand at 1678.511 kb on + strand at 1678.567 kb on - strand at 1678.610 kb on + strand at 1678.779 kb on + strand, within HP15_1586 at 1678.794 kb on - strand, within HP15_1586 at 1678.816 kb on + strand, within HP15_1586 at 1678.838 kb on + strand, within HP15_1586 at 1678.874 kb on + strand, within HP15_1586 at 1678.882 kb on - strand, within HP15_1586 at 1678.882 kb on - strand, within HP15_1586 at 1678.882 kb on - strand, within HP15_1586 at 1678.896 kb on + strand, within HP15_1586 at 1678.998 kb on + strand, within HP15_1586 at 1679.074 kb on - strand, within HP15_1586 at 1679.074 kb on - strand, within HP15_1586 at 1679.114 kb on + strand, within HP15_1586 at 1679.177 kb on + strand, within HP15_1586 at 1679.295 kb on + strand, within HP15_1586 at 1679.443 kb on - strand, within HP15_1586 at 1679.484 kb on - strand, within HP15_1586 at 1679.528 kb on + strand, within HP15_1586 at 1679.536 kb on - strand, within HP15_1586 at 1679.536 kb on - strand, within HP15_1586 at 1679.536 kb on - strand, within HP15_1586 at 1679.536 kb on - strand, within HP15_1586 at 1679.541 kb on - strand, within HP15_1586
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 1,675,232 + HP15_1584 0.50 +0.8 1,675,242 + HP15_1584 0.50 +0.2 1,675,291 - HP15_1584 0.54 +1.0 1,675,391 - HP15_1584 0.60 -0.3 1,675,396 + HP15_1584 0.61 -1.2 1,675,409 - HP15_1584 0.62 +0.2 1,675,516 + HP15_1584 0.69 -1.2 1,675,517 + HP15_1584 0.69 +0.1 1,675,668 + HP15_1584 0.79 +1.0 1,675,671 - HP15_1584 0.79 -0.2 1,675,676 - HP15_1584 0.80 +0.6 1,675,713 - HP15_1584 0.82 +0.5 1,675,753 - HP15_1584 0.85 -0.9 1,676,028 + -0.1 1,676,041 - -0.1 1,676,120 - +0.4 1,676,120 - +0.3 1,676,413 - HP15_1585 0.10 -0.4 1,676,504 - HP15_1585 0.14 +0.1 1,676,565 + HP15_1585 0.16 +0.1 1,676,839 + HP15_1585 0.28 -0.6 1,676,845 + HP15_1585 0.28 -0.2 1,676,847 - HP15_1585 0.28 -0.4 1,676,847 - HP15_1585 0.28 -0.2 1,676,982 + HP15_1585 0.33 -0.4 1,676,982 + HP15_1585 0.33 -0.2 1,676,982 + HP15_1585 0.33 -0.5 1,676,982 + HP15_1585 0.33 +0.3 1,676,990 - HP15_1585 0.34 +0.4 1,677,120 + HP15_1585 0.39 +0.6 1,677,151 - HP15_1585 0.40 -0.1 1,677,182 - HP15_1585 0.42 -0.6 1,677,304 + HP15_1585 0.47 +0.6 1,677,734 + HP15_1585 0.64 -0.1 1,677,735 - HP15_1585 0.64 -0.1 1,677,992 + HP15_1585 0.75 +0.0 1,678,026 - HP15_1585 0.76 -0.2 1,678,036 - HP15_1585 0.76 -0.3 1,678,053 + HP15_1585 0.77 +0.3 1,678,178 + HP15_1585 0.82 -0.7 1,678,184 - HP15_1585 0.82 +0.0 1,678,388 - +0.0 1,678,511 + +0.1 1,678,567 - -0.2 1,678,610 + +1.0 1,678,779 + HP15_1586 0.15 -0.1 1,678,794 - HP15_1586 0.17 -0.8 1,678,816 + HP15_1586 0.19 -0.3 1,678,838 + HP15_1586 0.21 +0.4 1,678,874 + HP15_1586 0.24 -0.3 1,678,882 - HP15_1586 0.25 +0.0 1,678,882 - HP15_1586 0.25 -0.2 1,678,882 - HP15_1586 0.25 -0.5 1,678,896 + HP15_1586 0.26 -0.5 1,678,998 + HP15_1586 0.36 -0.1 1,679,074 - HP15_1586 0.43 +0.8 1,679,074 - HP15_1586 0.43 -0.2 1,679,114 + HP15_1586 0.47 +0.5 1,679,177 + HP15_1586 0.53 +0.0 1,679,295 + HP15_1586 0.64 +0.2 1,679,443 - HP15_1586 0.79 +0.2 1,679,484 - HP15_1586 0.82 +0.9 1,679,528 + HP15_1586 0.87 +0.4 1,679,536 - HP15_1586 0.87 +0.4 1,679,536 - HP15_1586 0.87 -0.2 1,679,536 - HP15_1586 0.87 +1.4 1,679,536 - HP15_1586 0.87 -0.3 1,679,541 - HP15_1586 0.88 +0.2
Or see this region's nucleotide sequence