Strain Fitness in Marinobacter adhaerens HP15 around HP15_1585

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1584 and HP15_1585 are separated by 183 nucleotidesHP15_1585 and HP15_1586 are separated by 6 nucleotides HP15_1584: HP15_1584 - conserved hypothetical protein, at 1,674,490 to 1,675,980 _1584 HP15_1585: HP15_1585 - oxidoreductase, FAD/FMN-binding protein, at 1,676,164 to 1,678,614 _1585 HP15_1586: HP15_1586 - oxidoreductase N-terminal domain-containing protein, at 1,678,621 to 1,679,667 _1586 Position (kb) 1676 1677 1678 1679Strain fitness (log2 ratio) -1 0 1at 1675.232 kb on + strand, within HP15_1584at 1675.242 kb on + strand, within HP15_1584at 1675.291 kb on - strand, within HP15_1584at 1675.391 kb on - strand, within HP15_1584at 1675.396 kb on + strand, within HP15_1584at 1675.409 kb on - strand, within HP15_1584at 1675.516 kb on + strand, within HP15_1584at 1675.517 kb on + strand, within HP15_1584at 1675.668 kb on + strand, within HP15_1584at 1675.671 kb on - strand, within HP15_1584at 1675.676 kb on - strand, within HP15_1584at 1675.713 kb on - strand, within HP15_1584at 1675.753 kb on - strand, within HP15_1584at 1676.028 kb on + strandat 1676.041 kb on - strandat 1676.120 kb on - strandat 1676.120 kb on - strandat 1676.413 kb on - strand, within HP15_1585at 1676.504 kb on - strand, within HP15_1585at 1676.565 kb on + strand, within HP15_1585at 1676.839 kb on + strand, within HP15_1585at 1676.845 kb on + strand, within HP15_1585at 1676.847 kb on - strand, within HP15_1585at 1676.847 kb on - strand, within HP15_1585at 1676.982 kb on + strand, within HP15_1585at 1676.982 kb on + strand, within HP15_1585at 1676.982 kb on + strand, within HP15_1585at 1676.982 kb on + strand, within HP15_1585at 1676.990 kb on - strand, within HP15_1585at 1677.120 kb on + strand, within HP15_1585at 1677.151 kb on - strand, within HP15_1585at 1677.182 kb on - strand, within HP15_1585at 1677.304 kb on + strand, within HP15_1585at 1677.734 kb on + strand, within HP15_1585at 1677.735 kb on - strand, within HP15_1585at 1677.992 kb on + strand, within HP15_1585at 1678.026 kb on - strand, within HP15_1585at 1678.036 kb on - strand, within HP15_1585at 1678.053 kb on + strand, within HP15_1585at 1678.178 kb on + strand, within HP15_1585at 1678.184 kb on - strand, within HP15_1585at 1678.388 kb on - strandat 1678.511 kb on + strandat 1678.567 kb on - strandat 1678.610 kb on + strandat 1678.779 kb on + strand, within HP15_1586at 1678.794 kb on - strand, within HP15_1586at 1678.816 kb on + strand, within HP15_1586at 1678.838 kb on + strand, within HP15_1586at 1678.874 kb on + strand, within HP15_1586at 1678.882 kb on - strand, within HP15_1586at 1678.882 kb on - strand, within HP15_1586at 1678.882 kb on - strand, within HP15_1586at 1678.896 kb on + strand, within HP15_1586at 1678.998 kb on + strand, within HP15_1586at 1679.074 kb on - strand, within HP15_1586at 1679.074 kb on - strand, within HP15_1586at 1679.114 kb on + strand, within HP15_1586at 1679.177 kb on + strand, within HP15_1586at 1679.295 kb on + strand, within HP15_1586at 1679.443 kb on - strand, within HP15_1586at 1679.484 kb on - strand, within HP15_1586at 1679.528 kb on + strand, within HP15_1586at 1679.536 kb on - strand, within HP15_1586at 1679.536 kb on - strand, within HP15_1586at 1679.536 kb on - strand, within HP15_1586at 1679.536 kb on - strand, within HP15_1586at 1679.541 kb on - strand, within HP15_1586

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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1,675,232 + HP15_1584 0.50 +0.8
1,675,242 + HP15_1584 0.50 +0.2
1,675,291 - HP15_1584 0.54 +1.0
1,675,391 - HP15_1584 0.60 -0.3
1,675,396 + HP15_1584 0.61 -1.2
1,675,409 - HP15_1584 0.62 +0.2
1,675,516 + HP15_1584 0.69 -1.2
1,675,517 + HP15_1584 0.69 +0.1
1,675,668 + HP15_1584 0.79 +1.0
1,675,671 - HP15_1584 0.79 -0.2
1,675,676 - HP15_1584 0.80 +0.6
1,675,713 - HP15_1584 0.82 +0.5
1,675,753 - HP15_1584 0.85 -0.9
1,676,028 + -0.1
1,676,041 - -0.1
1,676,120 - +0.4
1,676,120 - +0.3
1,676,413 - HP15_1585 0.10 -0.4
1,676,504 - HP15_1585 0.14 +0.1
1,676,565 + HP15_1585 0.16 +0.1
1,676,839 + HP15_1585 0.28 -0.6
1,676,845 + HP15_1585 0.28 -0.2
1,676,847 - HP15_1585 0.28 -0.4
1,676,847 - HP15_1585 0.28 -0.2
1,676,982 + HP15_1585 0.33 -0.4
1,676,982 + HP15_1585 0.33 -0.2
1,676,982 + HP15_1585 0.33 -0.5
1,676,982 + HP15_1585 0.33 +0.3
1,676,990 - HP15_1585 0.34 +0.4
1,677,120 + HP15_1585 0.39 +0.6
1,677,151 - HP15_1585 0.40 -0.1
1,677,182 - HP15_1585 0.42 -0.6
1,677,304 + HP15_1585 0.47 +0.6
1,677,734 + HP15_1585 0.64 -0.1
1,677,735 - HP15_1585 0.64 -0.1
1,677,992 + HP15_1585 0.75 +0.0
1,678,026 - HP15_1585 0.76 -0.2
1,678,036 - HP15_1585 0.76 -0.3
1,678,053 + HP15_1585 0.77 +0.3
1,678,178 + HP15_1585 0.82 -0.7
1,678,184 - HP15_1585 0.82 +0.0
1,678,388 - +0.0
1,678,511 + +0.1
1,678,567 - -0.2
1,678,610 + +1.0
1,678,779 + HP15_1586 0.15 -0.1
1,678,794 - HP15_1586 0.17 -0.8
1,678,816 + HP15_1586 0.19 -0.3
1,678,838 + HP15_1586 0.21 +0.4
1,678,874 + HP15_1586 0.24 -0.3
1,678,882 - HP15_1586 0.25 +0.0
1,678,882 - HP15_1586 0.25 -0.2
1,678,882 - HP15_1586 0.25 -0.5
1,678,896 + HP15_1586 0.26 -0.5
1,678,998 + HP15_1586 0.36 -0.1
1,679,074 - HP15_1586 0.43 +0.8
1,679,074 - HP15_1586 0.43 -0.2
1,679,114 + HP15_1586 0.47 +0.5
1,679,177 + HP15_1586 0.53 +0.0
1,679,295 + HP15_1586 0.64 +0.2
1,679,443 - HP15_1586 0.79 +0.2
1,679,484 - HP15_1586 0.82 +0.9
1,679,528 + HP15_1586 0.87 +0.4
1,679,536 - HP15_1586 0.87 +0.4
1,679,536 - HP15_1586 0.87 -0.2
1,679,536 - HP15_1586 0.87 +1.4
1,679,536 - HP15_1586 0.87 -0.3
1,679,541 - HP15_1586 0.88 +0.2

Or see this region's nucleotide sequence