Strain Fitness in Marinobacter adhaerens HP15 around HP15_1461

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1460 and HP15_1461 are separated by 261 nucleotidesHP15_1461 and HP15_1462 overlap by 4 nucleotidesHP15_1462 and HP15_1463 are separated by 14 nucleotides HP15_1460: HP15_1460 - ABC-type transport system involved in resistance to organic solvents, permease component, at 1,535,931 to 1,537,046 _1460 HP15_1461: HP15_1461 - ATP-binding component of ABC transporter, at 1,537,308 to 1,538,258 _1461 HP15_1462: HP15_1462 - ABC-type multidrug transport system, permease component, at 1,538,255 to 1,539,028 _1462 HP15_1463: HP15_1463 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 1,539,043 to 1,539,861 _1463 Position (kb) 1537 1538 1539Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1536.351 kb on - strand, within HP15_1460at 1536.358 kb on + strand, within HP15_1460at 1536.408 kb on - strand, within HP15_1460at 1536.412 kb on - strand, within HP15_1460at 1536.424 kb on + strand, within HP15_1460at 1536.549 kb on - strand, within HP15_1460at 1536.743 kb on - strand, within HP15_1460at 1536.748 kb on - strand, within HP15_1460at 1536.754 kb on - strand, within HP15_1460at 1536.773 kb on + strand, within HP15_1460at 1536.799 kb on + strand, within HP15_1460at 1536.888 kb on - strand, within HP15_1460at 1536.982 kb on - strandat 1536.998 kb on - strandat 1537.079 kb on + strandat 1537.091 kb on + strandat 1537.313 kb on - strandat 1537.451 kb on + strand, within HP15_1461at 1537.684 kb on - strand, within HP15_1461at 1537.710 kb on - strand, within HP15_1461at 1537.793 kb on + strand, within HP15_1461at 1538.208 kb on + strandat 1538.240 kb on - strandat 1538.363 kb on + strand, within HP15_1462at 1538.434 kb on + strand, within HP15_1462at 1538.529 kb on + strand, within HP15_1462at 1538.529 kb on + strand, within HP15_1462at 1538.537 kb on - strand, within HP15_1462at 1538.563 kb on - strand, within HP15_1462at 1538.565 kb on + strand, within HP15_1462at 1538.565 kb on + strand, within HP15_1462at 1538.573 kb on - strand, within HP15_1462at 1538.711 kb on - strand, within HP15_1462at 1538.711 kb on - strand, within HP15_1462at 1538.722 kb on + strand, within HP15_1462at 1538.726 kb on + strand, within HP15_1462at 1538.754 kb on + strand, within HP15_1462at 1538.766 kb on + strand, within HP15_1462at 1538.781 kb on + strand, within HP15_1462at 1538.812 kb on - strand, within HP15_1462at 1538.871 kb on + strand, within HP15_1462at 1538.871 kb on + strand, within HP15_1462at 1538.878 kb on + strand, within HP15_1462at 1538.879 kb on - strand, within HP15_1462at 1538.879 kb on - strand, within HP15_1462at 1538.879 kb on - strand, within HP15_1462at 1539.046 kb on - strandat 1539.098 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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1,536,351 - HP15_1460 0.38 +0.5
1,536,358 + HP15_1460 0.38 -0.4
1,536,408 - HP15_1460 0.43 -0.0
1,536,412 - HP15_1460 0.43 -0.0
1,536,424 + HP15_1460 0.44 +0.3
1,536,549 - HP15_1460 0.55 +0.7
1,536,743 - HP15_1460 0.73 +0.0
1,536,748 - HP15_1460 0.73 -0.4
1,536,754 - HP15_1460 0.74 -0.3
1,536,773 + HP15_1460 0.75 -0.3
1,536,799 + HP15_1460 0.78 -0.2
1,536,888 - HP15_1460 0.86 -0.4
1,536,982 - -0.1
1,536,998 - -0.1
1,537,079 + +0.3
1,537,091 + +0.4
1,537,313 - -1.7
1,537,451 + HP15_1461 0.15 -0.6
1,537,684 - HP15_1461 0.40 -1.4
1,537,710 - HP15_1461 0.42 -0.5
1,537,793 + HP15_1461 0.51 -0.4
1,538,208 + +0.5
1,538,240 - -0.6
1,538,363 + HP15_1462 0.14 -0.4
1,538,434 + HP15_1462 0.23 +0.8
1,538,529 + HP15_1462 0.35 +0.7
1,538,529 + HP15_1462 0.35 -0.0
1,538,537 - HP15_1462 0.36 +0.3
1,538,563 - HP15_1462 0.40 -1.0
1,538,565 + HP15_1462 0.40 +0.1
1,538,565 + HP15_1462 0.40 -0.0
1,538,573 - HP15_1462 0.41 +0.4
1,538,711 - HP15_1462 0.59 +0.1
1,538,711 - HP15_1462 0.59 +0.3
1,538,722 + HP15_1462 0.60 -0.3
1,538,726 + HP15_1462 0.61 -0.2
1,538,754 + HP15_1462 0.64 +0.1
1,538,766 + HP15_1462 0.66 -0.1
1,538,781 + HP15_1462 0.68 +0.4
1,538,812 - HP15_1462 0.72 -2.0
1,538,871 + HP15_1462 0.80 +0.2
1,538,871 + HP15_1462 0.80 +2.9
1,538,878 + HP15_1462 0.80 +0.9
1,538,879 - HP15_1462 0.81 +0.1
1,538,879 - HP15_1462 0.81 -0.1
1,538,879 - HP15_1462 0.81 +0.7
1,539,046 - +0.7
1,539,098 + +0.4

Or see this region's nucleotide sequence