Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18155 and BWI76_RS18160 are separated by 37 nucleotides BWI76_RS18160 and BWI76_RS18165 are separated by 28 nucleotides BWI76_RS18165 and BWI76_RS18170 are separated by 1 nucleotides
BWI76_RS18155: BWI76_RS18155 - crossover junction endodeoxyribonuclease RuvC, at 3,773,122 to 3,773,643
_RS18155
BWI76_RS18160: BWI76_RS18160 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,773,681 to 3,774,421
_RS18160
BWI76_RS18165: BWI76_RS18165 - NUDIX pyrophosphatase, at 3,774,450 to 3,774,893
_RS18165
BWI76_RS18170: BWI76_RS18170 - aspartate--tRNA ligase, at 3,774,895 to 3,776,682
_RS18170
Position (kb) 3774
3775 Strain fitness (log2 ratio) -1
0
1 at 3774.045 kb on + strand, within BWI76_RS18160 at 3774.158 kb on - strand, within BWI76_RS18160 at 3774.396 kb on - strand at 3774.396 kb on - strand at 3774.501 kb on - strand, within BWI76_RS18165 at 3774.780 kb on + strand, within BWI76_RS18165
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 3,774,045 + BWI76_RS18160 0.49 -1.0 3,774,158 - BWI76_RS18160 0.64 -0.6 3,774,396 - -0.2 3,774,396 - -1.6 3,774,501 - BWI76_RS18165 0.11 -1.4 3,774,780 + BWI76_RS18165 0.74 -0.5
Or see this region's nucleotide sequence