Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15840

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15830 and BWI76_RS15835 are separated by 7 nucleotidesBWI76_RS15835 and BWI76_RS15840 are separated by 151 nucleotidesBWI76_RS15840 and BWI76_RS15845 overlap by 17 nucleotidesBWI76_RS15845 and BWI76_RS15850 overlap by 4 nucleotidesBWI76_RS15850 and BWI76_RS15855 overlap by 4 nucleotidesBWI76_RS15855 and BWI76_RS15860 overlap by 4 nucleotides BWI76_RS15830: BWI76_RS15830 - hypothetical protein, at 3,290,662 to 3,291,666 _RS15830 BWI76_RS15835: BWI76_RS15835 - hypothetical protein, at 3,291,674 to 3,291,871 _RS15835 BWI76_RS15840: BWI76_RS15840 - prophage protein, at 3,292,023 to 3,292,805 _RS15840 BWI76_RS15845: BWI76_RS15845 - hypothetical protein, at 3,292,789 to 3,293,079 _RS15845 BWI76_RS15850: BWI76_RS15850 - DUF1317 domain-containing protein, at 3,293,076 to 3,293,234 _RS15850 BWI76_RS15855: BWI76_RS15855 - hypothetical protein, at 3,293,231 to 3,293,458 _RS15855 BWI76_RS15860: BWI76_RS15860 - adenine-specific DNA methyltransferase, at 3,293,455 to 3,294,114 _RS15860 Position (kb) 3292 3293Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3291.068 kb on - strand, within BWI76_RS15830at 3291.241 kb on + strand, within BWI76_RS15830at 3291.274 kb on - strand, within BWI76_RS15830at 3291.377 kb on - strand, within BWI76_RS15830at 3291.400 kb on + strand, within BWI76_RS15830at 3291.535 kb on - strand, within BWI76_RS15830at 3291.559 kb on - strand, within BWI76_RS15830at 3291.559 kb on - strand, within BWI76_RS15830at 3291.589 kb on - strandat 3291.708 kb on - strand, within BWI76_RS15835at 3291.716 kb on - strand, within BWI76_RS15835at 3291.801 kb on + strand, within BWI76_RS15835at 3291.830 kb on + strand, within BWI76_RS15835at 3292.119 kb on + strand, within BWI76_RS15840at 3292.119 kb on + strand, within BWI76_RS15840at 3292.126 kb on - strand, within BWI76_RS15840at 3292.127 kb on - strand, within BWI76_RS15840at 3292.295 kb on + strand, within BWI76_RS15840at 3292.349 kb on + strand, within BWI76_RS15840at 3292.349 kb on - strand, within BWI76_RS15840at 3292.520 kb on + strand, within BWI76_RS15840at 3292.520 kb on + strand, within BWI76_RS15840at 3292.520 kb on + strand, within BWI76_RS15840at 3292.528 kb on - strand, within BWI76_RS15840at 3292.528 kb on - strand, within BWI76_RS15840at 3292.674 kb on - strand, within BWI76_RS15840at 3292.787 kb on - strandat 3293.003 kb on - strand, within BWI76_RS15845at 3293.200 kb on - strand, within BWI76_RS15850at 3293.215 kb on + strand, within BWI76_RS15850at 3293.538 kb on + strand, within BWI76_RS15860at 3293.610 kb on + strand, within BWI76_RS15860at 3293.677 kb on - strand, within BWI76_RS15860at 3293.694 kb on - strand, within BWI76_RS15860at 3293.736 kb on + strand, within BWI76_RS15860

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
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3,291,068 - BWI76_RS15830 0.40 -0.0
3,291,241 + BWI76_RS15830 0.58 -6.0
3,291,274 - BWI76_RS15830 0.61 -0.3
3,291,377 - BWI76_RS15830 0.71 -1.6
3,291,400 + BWI76_RS15830 0.73 -2.0
3,291,535 - BWI76_RS15830 0.87 -1.2
3,291,559 - BWI76_RS15830 0.89 -0.4
3,291,559 - BWI76_RS15830 0.89 +0.5
3,291,589 - -1.1
3,291,708 - BWI76_RS15835 0.17 -0.9
3,291,716 - BWI76_RS15835 0.21 -1.3
3,291,801 + BWI76_RS15835 0.64 -2.3
3,291,830 + BWI76_RS15835 0.79 -3.6
3,292,119 + BWI76_RS15840 0.12 -4.7
3,292,119 + BWI76_RS15840 0.12 -6.1
3,292,126 - BWI76_RS15840 0.13 -0.0
3,292,127 - BWI76_RS15840 0.13 -0.1
3,292,295 + BWI76_RS15840 0.35 -4.3
3,292,349 + BWI76_RS15840 0.42 -4.7
3,292,349 - BWI76_RS15840 0.42 -0.6
3,292,520 + BWI76_RS15840 0.63 -3.0
3,292,520 + BWI76_RS15840 0.63 -5.1
3,292,520 + BWI76_RS15840 0.63 +0.2
3,292,528 - BWI76_RS15840 0.64 -0.4
3,292,528 - BWI76_RS15840 0.64 -1.0
3,292,674 - BWI76_RS15840 0.83 -0.2
3,292,787 - +1.0
3,293,003 - BWI76_RS15845 0.74 +0.8
3,293,200 - BWI76_RS15850 0.78 -0.3
3,293,215 + BWI76_RS15850 0.87 -4.9
3,293,538 + BWI76_RS15860 0.13 +0.3
3,293,610 + BWI76_RS15860 0.23 +1.0
3,293,677 - BWI76_RS15860 0.34 +0.0
3,293,694 - BWI76_RS15860 0.36 +0.0
3,293,736 + BWI76_RS15860 0.43 -0.5

Or see this region's nucleotide sequence