Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04245 and BWI76_RS04250 are separated by 1 nucleotides BWI76_RS04250 and BWI76_RS04255 are separated by 3 nucleotides BWI76_RS04255 and BWI76_RS04260 are separated by 51 nucleotides BWI76_RS04260 and BWI76_RS04265 are separated by 77 nucleotides
BWI76_RS04245: BWI76_RS04245 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 872,525 to 874,987
_RS04245
BWI76_RS04250: BWI76_RS04250 - homoserine kinase, at 874,989 to 875,918
_RS04250
BWI76_RS04255: BWI76_RS04255 - threonine synthase, at 875,922 to 877,202
_RS04255
BWI76_RS04260: BWI76_RS04260 - peroxide stress protein YaaA, at 877,254 to 878,027
_RS04260
BWI76_RS04265: BWI76_RS04265 - sodium:alanine symporter family protein, at 878,105 to 879,535
_RS04265
Position (kb) 875
876
877
878 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 874.949 kb on + strand at 875.101 kb on - strand, within BWI76_RS04250 at 875.266 kb on + strand, within BWI76_RS04250 at 875.274 kb on - strand, within BWI76_RS04250 at 875.422 kb on - strand, within BWI76_RS04250 at 875.516 kb on - strand, within BWI76_RS04250 at 875.539 kb on - strand at 875.587 kb on + strand, within BWI76_RS04250 at 875.595 kb on - strand, within BWI76_RS04250 at 875.599 kb on + strand, within BWI76_RS04250 at 875.615 kb on - strand, within BWI76_RS04250 at 875.846 kb on - strand at 875.962 kb on + strand at 875.965 kb on - strand at 875.970 kb on - strand at 875.987 kb on - strand at 876.169 kb on - strand, within BWI76_RS04255 at 876.213 kb on - strand, within BWI76_RS04255 at 876.223 kb on + strand, within BWI76_RS04255 at 876.398 kb on + strand, within BWI76_RS04255 at 876.428 kb on + strand, within BWI76_RS04255 at 876.620 kb on + strand, within BWI76_RS04255 at 876.620 kb on + strand, within BWI76_RS04255 at 876.644 kb on + strand, within BWI76_RS04255 at 876.644 kb on + strand, within BWI76_RS04255 at 876.812 kb on + strand, within BWI76_RS04255 at 876.812 kb on + strand, within BWI76_RS04255 at 876.820 kb on - strand, within BWI76_RS04255 at 876.820 kb on - strand, within BWI76_RS04255 at 877.744 kb on + strand, within BWI76_RS04260 at 877.854 kb on - strand, within BWI76_RS04260 at 877.928 kb on + strand, within BWI76_RS04260 at 878.022 kb on + strand at 878.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 874,949 + -4.2 875,101 - BWI76_RS04250 0.12 -4.4 875,266 + BWI76_RS04250 0.30 -3.9 875,274 - BWI76_RS04250 0.31 -6.3 875,422 - BWI76_RS04250 0.47 -6.3 875,516 - BWI76_RS04250 0.57 -4.3 875,539 - -0.7 875,587 + BWI76_RS04250 0.64 -3.8 875,595 - BWI76_RS04250 0.65 -3.2 875,599 + BWI76_RS04250 0.66 -4.2 875,615 - BWI76_RS04250 0.67 -2.5 875,846 - -4.1 875,962 + -5.1 875,965 - -2.5 875,970 - -2.5 875,987 - -5.9 876,169 - BWI76_RS04255 0.19 -4.6 876,213 - BWI76_RS04255 0.23 -4.0 876,223 + BWI76_RS04255 0.23 -5.5 876,398 + BWI76_RS04255 0.37 -3.0 876,428 + BWI76_RS04255 0.40 -2.2 876,620 + BWI76_RS04255 0.54 -6.5 876,620 + BWI76_RS04255 0.54 -3.7 876,644 + BWI76_RS04255 0.56 -4.5 876,644 + BWI76_RS04255 0.56 -1.7 876,812 + BWI76_RS04255 0.69 -6.5 876,812 + BWI76_RS04255 0.69 -5.4 876,820 - BWI76_RS04255 0.70 -1.7 876,820 - BWI76_RS04255 0.70 -4.3 877,744 + BWI76_RS04260 0.63 -0.1 877,854 - BWI76_RS04260 0.78 -0.3 877,928 + BWI76_RS04260 0.87 -0.2 878,022 + -0.8 878,031 - -0.5
Or see this region's nucleotide sequence