Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3339.1

Experiment: Formate/Acetate-Sulfite (10/60-20 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfite (10/60-20 mM)
3,514,947	+	kdpA	DVU3339	0.42	+0.5
3,514,954	-	kdpA	DVU3339	0.43	+0.1
3,515,009	+	kdpA	DVU3339	0.46	-0.4
3,515,009	+	kdpA	DVU3339	0.46	-0.4
3,515,061	-	kdpA	DVU3339	0.49	-0.0
3,515,097	-	kdpA	DVU3339	0.51	-1.0
3,515,126	-	kdpA	DVU3339	0.53	-0.4
3,515,159	+	kdpA	DVU3339	0.55	-0.5
3,515,182	+	kdpA	DVU3339	0.56	+1.1
3,515,326	+	kdpA	DVU3339	0.65	-0.2
3,515,327	+	kdpA	DVU3339	0.65	-0.8
3,515,339	-	kdpA	DVU3339	0.65	-0.7
3,515,339	-	kdpA	DVU3339	0.65	-0.4
3,515,403	+	kdpA	DVU3339	0.69	-0.7
3,515,414	+	kdpA	DVU3339	0.70	-0.3
3,515,414	+	kdpA	DVU3339	0.70	-0.8
3,515,422	-	kdpA	DVU3339	0.70	+0.5
3,515,422	-	kdpA	DVU3339	0.70	-0.1
3,515,422	-	kdpA	DVU3339	0.70	+0.3
3,515,422	-	kdpA	DVU3339	0.70	+0.3
3,515,450	-	kdpA	DVU3339	0.72	+1.2
3,515,551	+	kdpA	DVU3339	0.78	-0.5
3,515,561	+	kdpA	DVU3339	0.78	-0.2
3,515,561	+	kdpA	DVU3339	0.78	+0.5
3,515,600	+	kdpA	DVU3339	0.81	+0.7
3,515,605	+	kdpA	DVU3339	0.81	+0.2
3,515,638	+	kdpA	DVU3339	0.83	-0.4
3,515,679	+	kdpA	DVU3339	0.85	-0.4
3,515,729	-	kdpA	DVU3339	0.88	-0.2
3,515,789	-				-0.7
3,515,793	+				-0.0
3,515,794	-				-0.1
3,515,801	-				-0.4
3,515,808	-				+0.5
3,515,810	+				-0.4
3,515,812	+				+0.5
3,515,829	-				+0.7
3,515,865	+				+0.6
3,515,865	+				-0.4
3,515,873	-				-1.0
3,515,873	-				-0.5
3,515,878	-				-0.5
3,515,897	-				+0.1
3,515,897	-				+0.6
3,515,956	-	kdpF	DVU3339.1	0.18	-0.7
3,515,958	+	kdpF	DVU3339.1	0.20	-0.4
3,515,988	-	kdpF	DVU3339.1	0.53	-0.9
3,516,031	+				-0.8
3,516,031	-				+0.6
3,516,066	+				+0.9
3,516,233	+				+0.2
3,516,241	-				-0.4
3,516,549	+				-0.5
3,516,549	+				-0.2
3,516,549	+				-1.3
3,516,549	+				-0.1
3,516,557	-				-1.1
3,516,557	-				+0.2
3,516,601	-				+0.4
3,516,669	+		DVU3342	0.23	-0.0
3,516,702	+		DVU3342	0.31	-0.2
3,516,720	+		DVU3342	0.35	-1.2
3,516,736	+		DVU3342	0.39	+0.0
3,516,745	+		DVU3342	0.41	-0.3
3,516,826	+		DVU3342	0.61	-0.2
3,516,848	-		DVU3342	0.66	-0.0
3,516,930	+		DVU3342	0.86	-1.3
3,516,936	+		DVU3342	0.87	-0.3
3,516,936	+		DVU3342	0.87	+0.5
3,516,938	+		DVU3342	0.88	-0.5
3,516,938	+		DVU3342	0.88	-1.4
3,516,938	-		DVU3342	0.88	-0.1
3,516,938	-		DVU3342	0.88	-0.7
3,516,944	-		DVU3342	0.89	-0.7
3,517,027	+		DVU3343	0.10	+0.1