Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1852
Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfite (10/60-20 mM) |
---|---|---|---|---|---|
remove | |||||
1,919,403 | + | DVU1851 | 0.45 | -0.2 | |
1,919,423 | + | DVU1851 | 0.47 | +0.0 | |
1,919,462 | - | DVU1851 | 0.50 | +0.4 | |
1,919,593 | + | DVU1851 | 0.59 | +0.6 | |
1,919,639 | + | DVU1851 | 0.63 | -0.1 | |
1,919,729 | - | DVU1851 | 0.70 | -0.4 | |
1,919,752 | - | DVU1851 | 0.72 | -0.3 | |
1,919,752 | - | DVU1851 | 0.72 | -0.4 | |
1,919,910 | - | DVU1851 | 0.83 | +0.6 | |
1,919,940 | - | DVU1851 | 0.86 | -0.8 | |
1,920,043 | - | -0.5 | |||
1,920,635 | - | DVU1852 | 0.58 | -0.4 | |
1,920,636 | - | DVU1852 | 0.58 | -0.4 | |
1,920,637 | + | DVU1852 | 0.58 | -0.4 | |
1,920,647 | - | DVU1852 | 0.59 | -0.6 | |
1,920,652 | - | DVU1852 | 0.60 | -1.0 | |
1,920,855 | + | -0.0 | |||
1,920,863 | - | -0.3 | |||
1,920,934 | - | +0.3 | |||
1,920,982 | + | +0.4 | |||
1,921,179 | - | DVU1853 | 0.35 | +0.2 | |
1,921,247 | + | DVU1853 | 0.58 | -1.1 | |
1,921,368 | - | -0.2 | |||
1,921,576 | + | DVU1854 | 0.18 | +0.1 | |
1,921,639 | - | DVU1854 | 0.27 | -0.3 | |
1,921,707 | - | DVU1854 | 0.37 | +0.1 | |
1,921,825 | - | DVU1854 | 0.54 | +0.3 | |
1,921,831 | + | DVU1854 | 0.55 | -0.3 |
Or see this region's nucleotide sequence