Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt iciA and DVU0595 are separated by 153 nucleotides DVU0595 and lytR are separated by 159 nucleotides
DVU0594: iciA - chromosome initiation inhibitor (TIGR), at 662,909 to 663,811
iciA
DVU0595: DVU0595 - conserved hypothetical protein (TIGR), at 663,965 to 664,312
DVU0595
DVU0596: lytR - DNA-binding response regulator LytR (TIGR), at 664,472 to 665,245
lytR
Position (kb) 663
664
665 Strain fitness (log2 ratio) -2
-1
0
1
2 at 662.989 kb on - strand at 663.026 kb on + strand, within iciA at 663.034 kb on - strand, within iciA at 663.036 kb on + strand, within iciA at 663.061 kb on + strand, within iciA at 663.069 kb on - strand, within iciA at 663.074 kb on - strand, within iciA at 663.076 kb on + strand, within iciA at 663.111 kb on + strand, within iciA at 663.117 kb on + strand, within iciA at 663.119 kb on - strand, within iciA at 663.119 kb on - strand, within iciA at 663.139 kb on + strand, within iciA at 663.147 kb on - strand, within iciA at 663.173 kb on - strand, within iciA at 663.196 kb on + strand, within iciA at 663.370 kb on + strand, within iciA at 663.378 kb on - strand, within iciA at 663.383 kb on - strand, within iciA at 663.383 kb on - strand, within iciA at 663.383 kb on - strand, within iciA at 663.407 kb on - strand, within iciA at 663.454 kb on - strand, within iciA at 663.626 kb on - strand, within iciA at 663.714 kb on - strand, within iciA at 663.790 kb on - strand at 663.790 kb on - strand at 663.790 kb on - strand at 663.808 kb on + strand at 663.862 kb on + strand at 663.903 kb on - strand at 663.903 kb on - strand at 663.916 kb on - strand at 663.918 kb on - strand at 663.918 kb on - strand at 663.918 kb on - strand at 663.994 kb on + strand at 664.017 kb on + strand, within DVU0595 at 664.161 kb on + strand, within DVU0595 at 664.259 kb on - strand, within DVU0595 at 664.288 kb on + strand at 664.306 kb on + strand at 664.306 kb on + strand at 664.308 kb on - strand at 664.329 kb on - strand at 664.332 kb on + strand at 664.350 kb on - strand at 664.423 kb on + strand at 664.425 kb on + strand at 664.581 kb on + strand, within lytR at 664.662 kb on + strand, within lytR at 664.664 kb on + strand, within lytR at 664.681 kb on + strand, within lytR at 664.855 kb on + strand, within lytR at 664.900 kb on - strand, within lytR at 665.036 kb on + strand, within lytR at 665.044 kb on - strand, within lytR at 665.051 kb on - strand, within lytR at 665.051 kb on - strand, within lytR at 665.085 kb on - strand, within lytR at 665.107 kb on + strand, within lytR at 665.120 kb on - strand, within lytR
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 662,989 - -0.8 663,026 + iciA DVU0594 0.13 -1.3 663,034 - iciA DVU0594 0.14 -0.2 663,036 + iciA DVU0594 0.14 -1.0 663,061 + iciA DVU0594 0.17 -1.1 663,069 - iciA DVU0594 0.18 +0.1 663,074 - iciA DVU0594 0.18 -0.1 663,076 + iciA DVU0594 0.18 +1.8 663,111 + iciA DVU0594 0.22 +0.2 663,117 + iciA DVU0594 0.23 -0.6 663,119 - iciA DVU0594 0.23 -0.4 663,119 - iciA DVU0594 0.23 -0.5 663,139 + iciA DVU0594 0.25 -0.1 663,147 - iciA DVU0594 0.26 +0.1 663,173 - iciA DVU0594 0.29 +0.3 663,196 + iciA DVU0594 0.32 +1.0 663,370 + iciA DVU0594 0.51 +0.2 663,378 - iciA DVU0594 0.52 -0.3 663,383 - iciA DVU0594 0.52 -0.1 663,383 - iciA DVU0594 0.52 -0.7 663,383 - iciA DVU0594 0.52 +0.3 663,407 - iciA DVU0594 0.55 +1.2 663,454 - iciA DVU0594 0.60 -1.0 663,626 - iciA DVU0594 0.79 -1.1 663,714 - iciA DVU0594 0.89 -1.4 663,790 - -0.1 663,790 - -0.5 663,790 - -0.0 663,808 + +1.4 663,862 + +1.6 663,903 - -0.7 663,903 - -0.7 663,916 - -0.8 663,918 - -0.3 663,918 - +0.2 663,918 - +0.2 663,994 + -0.6 664,017 + DVU0595 0.15 -0.5 664,161 + DVU0595 0.56 +1.5 664,259 - DVU0595 0.84 -0.3 664,288 + -0.0 664,306 + -0.1 664,306 + -0.7 664,308 - -1.9 664,329 - +1.2 664,332 + +0.1 664,350 - -0.7 664,423 + -0.1 664,425 + +0.2 664,581 + lytR DVU0596 0.14 +1.2 664,662 + lytR DVU0596 0.25 -0.4 664,664 + lytR DVU0596 0.25 +0.5 664,681 + lytR DVU0596 0.27 +0.6 664,855 + lytR DVU0596 0.49 -0.9 664,900 - lytR DVU0596 0.55 -0.1 665,036 + lytR DVU0596 0.73 +0.6 665,044 - lytR DVU0596 0.74 +0.1 665,051 - lytR DVU0596 0.75 +0.0 665,051 - lytR DVU0596 0.75 -0.9 665,085 - lytR DVU0596 0.79 -0.5 665,107 + lytR DVU0596 0.82 -0.3 665,120 - lytR DVU0596 0.84 -0.1
Or see this region's nucleotide sequence