Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0578 and DVU0579 overlap by 4 nucleotides DVU0579 and moaA overlap by 4 nucleotides moaA and DVU0581 are separated by 236 nucleotides DVU0581 and DVU0582 are separated by 35 nucleotides
DVU0578: DVU0578 - formate dehydrogenase accessory protein FdhD, putative (TIGR), at 642,474 to 643,262
DVU0578
DVU0579: DVU0579 - molybdopterin-guanine dinucleotide biosynthesis protein A, putative (TIGR), at 643,259 to 643,927
DVU0579
DVU0580: moaA - molybdenum cofactor biosynthesis protein A (TIGR), at 643,924 to 644,949
moaA
DVU0581: DVU0581 - response regulator/anti-anti-sigma factor (TIGR), at 645,186 to 645,887
DVU0581
DVU0582: DVU0582 - sensory box histidine kinase (TIGR), at 645,923 to 647,941
DVU0582
Position (kb) 643
644
645 Strain fitness (log2 ratio) -2
-1
0
1 at 642.931 kb on + strand, within DVU0578 at 642.931 kb on + strand, within DVU0578 at 642.931 kb on + strand, within DVU0578 at 642.931 kb on + strand, within DVU0578 at 642.963 kb on + strand, within DVU0578 at 642.963 kb on + strand, within DVU0578 at 643.076 kb on + strand, within DVU0578 at 643.180 kb on + strand, within DVU0578 at 643.188 kb on + strand at 643.198 kb on - strand at 643.323 kb on + strand at 643.362 kb on - strand, within DVU0579 at 643.419 kb on + strand, within DVU0579 at 643.427 kb on - strand, within DVU0579 at 643.435 kb on - strand, within DVU0579 at 643.488 kb on + strand, within DVU0579 at 643.506 kb on - strand, within DVU0579 at 643.509 kb on + strand, within DVU0579 at 643.517 kb on - strand, within DVU0579 at 643.543 kb on - strand, within DVU0579 at 643.569 kb on - strand, within DVU0579 at 643.598 kb on - strand, within DVU0579 at 643.609 kb on - strand, within DVU0579 at 643.685 kb on + strand, within DVU0579 at 643.816 kb on + strand, within DVU0579 at 643.825 kb on - strand, within DVU0579 at 643.849 kb on + strand, within DVU0579 at 643.856 kb on + strand, within DVU0579 at 643.882 kb on - strand at 643.973 kb on + strand at 643.981 kb on - strand at 644.017 kb on + strand at 644.187 kb on - strand, within moaA at 644.190 kb on + strand, within moaA at 644.309 kb on + strand, within moaA at 644.426 kb on - strand, within moaA at 644.449 kb on - strand, within moaA at 644.669 kb on + strand, within moaA at 644.808 kb on - strand, within moaA at 644.810 kb on + strand, within moaA at 644.810 kb on + strand, within moaA at 644.818 kb on - strand, within moaA at 644.850 kb on - strand at 644.925 kb on + strand at 644.925 kb on + strand at 644.999 kb on - strand at 645.009 kb on - strand at 645.072 kb on + strand at 645.077 kb on + strand at 645.093 kb on - strand at 645.110 kb on + strand at 645.191 kb on + strand at 645.191 kb on - strand at 645.196 kb on + strand at 645.261 kb on - strand, within DVU0581 at 645.279 kb on + strand, within DVU0581 at 645.287 kb on - strand, within DVU0581 at 645.307 kb on + strand, within DVU0581 at 645.310 kb on + strand, within DVU0581 at 645.312 kb on + strand, within DVU0581 at 645.320 kb on - strand, within DVU0581 at 645.385 kb on - strand, within DVU0581 at 645.433 kb on + strand, within DVU0581 at 645.433 kb on + strand, within DVU0581 at 645.478 kb on - strand, within DVU0581 at 645.544 kb on + strand, within DVU0581 at 645.612 kb on + strand, within DVU0581 at 645.633 kb on + strand, within DVU0581 at 645.633 kb on + strand, within DVU0581 at 645.642 kb on + strand, within DVU0581 at 645.650 kb on - strand, within DVU0581 at 645.686 kb on + strand, within DVU0581 at 645.686 kb on + strand, within DVU0581 at 645.694 kb on - strand, within DVU0581 at 645.811 kb on + strand, within DVU0581 at 645.843 kb on + strand at 645.903 kb on + strand at 645.911 kb on - strand at 645.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 642,931 + DVU0578 0.58 +0.3 642,931 + DVU0578 0.58 -0.6 642,931 + DVU0578 0.58 +0.4 642,931 + DVU0578 0.58 -0.5 642,963 + DVU0578 0.62 +0.1 642,963 + DVU0578 0.62 +0.0 643,076 + DVU0578 0.76 +0.2 643,180 + DVU0578 0.89 -1.5 643,188 + -0.2 643,198 - +0.2 643,323 + +0.7 643,362 - DVU0579 0.15 -0.4 643,419 + DVU0579 0.24 -0.4 643,427 - DVU0579 0.25 -0.7 643,435 - DVU0579 0.26 +0.6 643,488 + DVU0579 0.34 +0.7 643,506 - DVU0579 0.37 +0.3 643,509 + DVU0579 0.37 +0.3 643,517 - DVU0579 0.39 +0.7 643,543 - DVU0579 0.42 +0.1 643,569 - DVU0579 0.46 +0.6 643,598 - DVU0579 0.51 +0.1 643,609 - DVU0579 0.52 -0.2 643,685 + DVU0579 0.64 -0.4 643,816 + DVU0579 0.83 +0.2 643,825 - DVU0579 0.85 +0.2 643,849 + DVU0579 0.88 +0.4 643,856 + DVU0579 0.89 -1.1 643,882 - +0.2 643,973 + -1.2 643,981 - +0.3 644,017 + -1.6 644,187 - moaA DVU0580 0.26 +0.4 644,190 + moaA DVU0580 0.26 +1.0 644,309 + moaA DVU0580 0.38 +1.1 644,426 - moaA DVU0580 0.49 +0.1 644,449 - moaA DVU0580 0.51 +0.9 644,669 + moaA DVU0580 0.73 +0.4 644,808 - moaA DVU0580 0.86 +0.2 644,810 + moaA DVU0580 0.86 +0.5 644,810 + moaA DVU0580 0.86 -0.1 644,818 - moaA DVU0580 0.87 +0.2 644,850 - -2.1 644,925 + +0.3 644,925 + +0.2 644,999 - -0.3 645,009 - -0.6 645,072 + +0.3 645,077 + -0.3 645,093 - -0.2 645,110 + +1.1 645,191 + +0.1 645,191 - -1.8 645,196 + -0.5 645,261 - DVU0581 0.11 -0.9 645,279 + DVU0581 0.13 +0.1 645,287 - DVU0581 0.14 -0.2 645,307 + DVU0581 0.17 -0.4 645,310 + DVU0581 0.18 +0.7 645,312 + DVU0581 0.18 -0.3 645,320 - DVU0581 0.19 -0.6 645,385 - DVU0581 0.28 +0.0 645,433 + DVU0581 0.35 -0.2 645,433 + DVU0581 0.35 -0.6 645,478 - DVU0581 0.42 -1.9 645,544 + DVU0581 0.51 +0.3 645,612 + DVU0581 0.61 -0.4 645,633 + DVU0581 0.64 -0.4 645,633 + DVU0581 0.64 -0.4 645,642 + DVU0581 0.65 -0.7 645,650 - DVU0581 0.66 +0.8 645,686 + DVU0581 0.71 -1.2 645,686 + DVU0581 0.71 -0.9 645,694 - DVU0581 0.72 +0.2 645,811 + DVU0581 0.89 +0.6 645,843 + -0.0 645,903 + +0.1 645,911 - +1.2 645,933 + -0.4
Or see this region's nucleotide sequence