Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0460 and DVU0461 are separated by 8 nucleotides DVU0461 and DVU0462 are separated by 2 nucleotides
DVU0460: DVU0460 - predicted phospho-2-dehydro-3-deoxyheptonate aldolase (TIGR), at 527,671 to 528,471
DVU0460
DVU0461: DVU0461 - predicted 3-dehydroquinate synthase (TIGR), at 528,480 to 529,451
DVU0461
DVU0462: DVU0462 - chorismate mutase/prephenate dehydratase (TIGR), at 529,454 to 530,629
DVU0462
Position (kb) 528
529
530 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 527.601 kb on - strand at 527.661 kb on + strand at 527.688 kb on + strand at 527.688 kb on + strand at 527.848 kb on + strand, within DVU0460 at 528.006 kb on + strand, within DVU0460 at 528.075 kb on + strand, within DVU0460 at 528.204 kb on + strand, within DVU0460 at 528.396 kb on + strand at 528.396 kb on + strand at 528.404 kb on - strand at 528.404 kb on - strand at 528.421 kb on + strand at 528.425 kb on + strand at 528.426 kb on + strand at 528.439 kb on + strand at 528.444 kb on + strand at 528.457 kb on - strand at 528.731 kb on - strand, within DVU0461 at 529.569 kb on + strand at 529.581 kb on + strand, within DVU0462 at 529.589 kb on - strand, within DVU0462 at 529.589 kb on - strand, within DVU0462 at 529.624 kb on + strand, within DVU0462 at 529.657 kb on - strand, within DVU0462 at 529.699 kb on + strand, within DVU0462 at 529.768 kb on + strand, within DVU0462 at 529.861 kb on + strand, within DVU0462 at 529.861 kb on + strand, within DVU0462 at 529.869 kb on - strand, within DVU0462 at 529.926 kb on + strand, within DVU0462 at 529.941 kb on + strand, within DVU0462 at 529.941 kb on + strand, within DVU0462 at 530.011 kb on + strand, within DVU0462 at 530.038 kb on + strand, within DVU0462 at 530.038 kb on + strand, within DVU0462 at 530.092 kb on - strand, within DVU0462 at 530.212 kb on - strand, within DVU0462 at 530.356 kb on + strand, within DVU0462 at 530.356 kb on + strand, within DVU0462 at 530.356 kb on + strand, within DVU0462 at 530.364 kb on - strand, within DVU0462 at 530.404 kb on + strand, within DVU0462 at 530.426 kb on + strand, within DVU0462 at 530.440 kb on - strand, within DVU0462
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 527,601 - +0.1 527,661 + -1.4 527,688 + -1.7 527,688 + -1.3 527,848 + DVU0460 0.22 +0.4 528,006 + DVU0460 0.42 +0.4 528,075 + DVU0460 0.50 -1.3 528,204 + DVU0460 0.67 -1.0 528,396 + +1.1 528,396 + -0.7 528,404 - -0.4 528,404 - -0.3 528,421 + -1.7 528,425 + -0.0 528,426 + +0.6 528,439 + -3.5 528,444 + -0.3 528,457 - -2.2 528,731 - DVU0461 0.26 -0.4 529,569 + -1.8 529,581 + DVU0462 0.11 -2.2 529,589 - DVU0462 0.11 -2.1 529,589 - DVU0462 0.11 -1.1 529,624 + DVU0462 0.14 -2.9 529,657 - DVU0462 0.17 -1.7 529,699 + DVU0462 0.21 -2.5 529,768 + DVU0462 0.27 -2.1 529,861 + DVU0462 0.35 -2.6 529,861 + DVU0462 0.35 -2.3 529,869 - DVU0462 0.35 -1.1 529,926 + DVU0462 0.40 -2.0 529,941 + DVU0462 0.41 -1.0 529,941 + DVU0462 0.41 -3.8 530,011 + DVU0462 0.47 +1.8 530,038 + DVU0462 0.50 -1.7 530,038 + DVU0462 0.50 -1.8 530,092 - DVU0462 0.54 -2.6 530,212 - DVU0462 0.64 -2.3 530,356 + DVU0462 0.77 -3.0 530,356 + DVU0462 0.77 -2.1 530,356 + DVU0462 0.77 -1.5 530,364 - DVU0462 0.77 -0.3 530,404 + DVU0462 0.81 -2.4 530,426 + DVU0462 0.83 -0.0 530,440 - DVU0462 0.84 -2.4
Or see this region's nucleotide sequence