Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0376 and trxB-1 are separated by 3 nucleotides trxB-1 and DVU0378 are separated by 18 nucleotides DVU0378 and DVU0379 are separated by 22 nucleotides DVU0379 and DVU0380 are separated by 43 nucleotides
DVU0376: DVU0376 - hypothetical protein (TIGR), at 427,237 to 427,503
DVU0376
DVU0377: trxB-1 - thioredoxin reductase (TIGR), at 427,507 to 428,424
trxB-1
DVU0378: DVU0378 - thioredoxin, putative (TIGR), at 428,443 to 428,757
DVU0378
DVU0379: DVU0379 - transcriptional regulator, putative (TIGR), at 428,780 to 429,457
DVU0379
DVU0380: DVU0380 - sulfatase, putative (TIGR), at 429,501 to 431,063
DVU0380
Position (kb) 428
429 Strain fitness (log2 ratio) -1
0
1 at 427.502 kb on - strand at 427.504 kb on + strand at 427.546 kb on - strand at 427.553 kb on - strand at 427.645 kb on + strand, within trxB-1 at 427.645 kb on + strand, within trxB-1 at 427.753 kb on + strand, within trxB-1 at 427.785 kb on + strand, within trxB-1 at 427.795 kb on + strand, within trxB-1 at 427.950 kb on - strand, within trxB-1 at 427.951 kb on + strand, within trxB-1 at 428.116 kb on + strand, within trxB-1 at 428.143 kb on - strand, within trxB-1 at 428.210 kb on - strand, within trxB-1 at 428.285 kb on + strand, within trxB-1 at 428.568 kb on + strand, within DVU0378 at 428.568 kb on + strand, within DVU0378 at 428.651 kb on + strand, within DVU0378 at 428.664 kb on + strand, within DVU0378 at 428.786 kb on - strand at 428.940 kb on + strand, within DVU0379 at 428.949 kb on + strand, within DVU0379 at 428.957 kb on - strand, within DVU0379 at 429.022 kb on - strand, within DVU0379 at 429.077 kb on - strand, within DVU0379 at 429.227 kb on - strand, within DVU0379 at 429.272 kb on - strand, within DVU0379 at 429.317 kb on + strand, within DVU0379 at 429.402 kb on - strand at 429.411 kb on - strand at 429.500 kb on + strand at 429.628 kb on + strand at 429.671 kb on - strand, within DVU0380
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 427,502 - -0.2 427,504 + -1.0 427,546 - -0.2 427,553 - -1.3 427,645 + trxB-1 DVU0377 0.15 -1.6 427,645 + trxB-1 DVU0377 0.15 -0.4 427,753 + trxB-1 DVU0377 0.27 -0.4 427,785 + trxB-1 DVU0377 0.30 -0.1 427,795 + trxB-1 DVU0377 0.31 -0.3 427,950 - trxB-1 DVU0377 0.48 -0.3 427,951 + trxB-1 DVU0377 0.48 +0.9 428,116 + trxB-1 DVU0377 0.66 -0.3 428,143 - trxB-1 DVU0377 0.69 -1.0 428,210 - trxB-1 DVU0377 0.77 +0.0 428,285 + trxB-1 DVU0377 0.85 -0.5 428,568 + DVU0378 0.40 +0.4 428,568 + DVU0378 0.40 +0.2 428,651 + DVU0378 0.66 +1.7 428,664 + DVU0378 0.70 -0.5 428,786 - +0.4 428,940 + DVU0379 0.24 +0.4 428,949 + DVU0379 0.25 -0.7 428,957 - DVU0379 0.26 -0.2 429,022 - DVU0379 0.36 -0.4 429,077 - DVU0379 0.44 -0.3 429,227 - DVU0379 0.66 +0.3 429,272 - DVU0379 0.73 -1.2 429,317 + DVU0379 0.79 -0.8 429,402 - -0.1 429,411 - -0.5 429,500 + -0.4 429,628 + -0.9 429,671 - DVU0380 0.11 -1.6
Or see this region's nucleotide sequence