Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0127 and DVU0128 are separated by 215 nucleotides DVU0128 and DVU0129 are separated by 244 nucleotides
DVU0127: DVU0127 - membrane protein, putative (TIGR), at 162,862 to 163,974
DVU0127
DVU0128: DVU0128 - membrane protein, putative (TIGR), at 164,190 to 165,248
DVU0128
DVU0129: DVU0129 - sensory box/HDIG domain protein (TIGR), at 165,493 to 166,851
DVU0129
Position (kb) 164
165
166 Strain fitness (log2 ratio) -1
0
1
2
3 at 163.277 kb on - strand, within DVU0127 at 163.303 kb on + strand, within DVU0127 at 163.303 kb on + strand, within DVU0127 at 163.303 kb on + strand, within DVU0127 at 163.325 kb on - strand, within DVU0127 at 163.364 kb on + strand, within DVU0127 at 163.364 kb on + strand, within DVU0127 at 163.372 kb on - strand, within DVU0127 at 163.434 kb on + strand, within DVU0127 at 163.471 kb on - strand, within DVU0127 at 163.486 kb on - strand, within DVU0127 at 163.496 kb on - strand, within DVU0127 at 163.511 kb on - strand, within DVU0127 at 163.574 kb on - strand, within DVU0127 at 163.578 kb on + strand, within DVU0127 at 163.591 kb on - strand, within DVU0127 at 163.719 kb on - strand, within DVU0127 at 163.759 kb on - strand, within DVU0127 at 163.791 kb on - strand, within DVU0127 at 163.818 kb on + strand, within DVU0127 at 163.825 kb on + strand, within DVU0127 at 163.826 kb on - strand, within DVU0127 at 163.885 kb on + strand at 163.966 kb on - strand at 163.972 kb on - strand at 164.034 kb on + strand at 164.034 kb on + strand at 164.042 kb on - strand at 164.241 kb on + strand at 164.249 kb on - strand at 164.272 kb on + strand at 164.282 kb on + strand at 164.290 kb on - strand at 164.443 kb on - strand, within DVU0128 at 164.443 kb on - strand, within DVU0128 at 164.457 kb on + strand, within DVU0128 at 164.460 kb on - strand, within DVU0128 at 164.495 kb on - strand, within DVU0128 at 164.501 kb on + strand, within DVU0128 at 164.501 kb on + strand, within DVU0128 at 164.501 kb on + strand, within DVU0128 at 164.514 kb on + strand, within DVU0128 at 164.527 kb on + strand, within DVU0128 at 164.593 kb on + strand, within DVU0128 at 164.742 kb on - strand, within DVU0128 at 164.859 kb on - strand, within DVU0128 at 165.006 kb on + strand, within DVU0128 at 165.006 kb on + strand, within DVU0128 at 165.014 kb on - strand, within DVU0128 at 165.014 kb on - strand, within DVU0128 at 165.063 kb on + strand, within DVU0128 at 165.109 kb on - strand, within DVU0128 at 165.119 kb on + strand, within DVU0128 at 165.127 kb on + strand, within DVU0128 at 165.257 kb on - strand at 165.302 kb on + strand at 165.361 kb on + strand at 165.518 kb on - strand at 165.646 kb on - strand, within DVU0129 at 165.674 kb on + strand, within DVU0129 at 165.697 kb on - strand, within DVU0129 at 165.710 kb on + strand, within DVU0129 at 165.710 kb on + strand, within DVU0129 at 165.804 kb on + strand, within DVU0129 at 165.811 kb on + strand, within DVU0129 at 165.819 kb on - strand, within DVU0129 at 165.869 kb on - strand, within DVU0129 at 165.952 kb on + strand, within DVU0129 at 166.133 kb on + strand, within DVU0129 at 166.133 kb on + strand, within DVU0129 at 166.152 kb on - strand, within DVU0129 at 166.172 kb on - strand, within DVU0129
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 163,277 - DVU0127 0.37 +0.4 163,303 + DVU0127 0.40 +0.1 163,303 + DVU0127 0.40 +0.4 163,303 + DVU0127 0.40 -0.2 163,325 - DVU0127 0.42 -0.3 163,364 + DVU0127 0.45 -0.2 163,364 + DVU0127 0.45 +0.5 163,372 - DVU0127 0.46 -0.3 163,434 + DVU0127 0.51 +0.6 163,471 - DVU0127 0.55 -0.1 163,486 - DVU0127 0.56 -1.4 163,496 - DVU0127 0.57 -0.1 163,511 - DVU0127 0.58 +0.0 163,574 - DVU0127 0.64 -1.2 163,578 + DVU0127 0.64 -0.4 163,591 - DVU0127 0.65 -0.0 163,719 - DVU0127 0.77 +0.3 163,759 - DVU0127 0.81 -1.6 163,791 - DVU0127 0.83 -0.1 163,818 + DVU0127 0.86 +0.0 163,825 + DVU0127 0.87 +0.9 163,826 - DVU0127 0.87 -1.2 163,885 + +1.0 163,966 - -0.1 163,972 - +0.1 164,034 + +0.1 164,034 + +0.2 164,042 - +0.4 164,241 + +0.3 164,249 - +0.8 164,272 + +0.1 164,282 + +0.1 164,290 - -0.2 164,443 - DVU0128 0.24 -0.7 164,443 - DVU0128 0.24 +0.1 164,457 + DVU0128 0.25 +0.0 164,460 - DVU0128 0.25 +0.2 164,495 - DVU0128 0.29 +2.9 164,501 + DVU0128 0.29 +0.1 164,501 + DVU0128 0.29 +1.6 164,501 + DVU0128 0.29 -0.9 164,514 + DVU0128 0.31 +1.8 164,527 + DVU0128 0.32 +0.3 164,593 + DVU0128 0.38 +0.5 164,742 - DVU0128 0.52 +0.0 164,859 - DVU0128 0.63 +0.6 165,006 + DVU0128 0.77 +0.7 165,006 + DVU0128 0.77 +1.1 165,014 - DVU0128 0.78 +0.1 165,014 - DVU0128 0.78 -0.7 165,063 + DVU0128 0.82 +0.9 165,109 - DVU0128 0.87 +0.1 165,119 + DVU0128 0.88 -0.5 165,127 + DVU0128 0.88 +0.3 165,257 - +2.2 165,302 + +0.5 165,361 + -1.4 165,518 - +1.0 165,646 - DVU0129 0.11 +0.3 165,674 + DVU0129 0.13 -0.3 165,697 - DVU0129 0.15 +0.2 165,710 + DVU0129 0.16 +1.9 165,710 + DVU0129 0.16 +0.2 165,804 + DVU0129 0.23 -0.0 165,811 + DVU0129 0.23 +0.1 165,819 - DVU0129 0.24 -0.2 165,869 - DVU0129 0.28 -0.6 165,952 + DVU0129 0.34 -0.1 166,133 + DVU0129 0.47 -1.2 166,133 + DVU0129 0.47 -0.5 166,152 - DVU0129 0.48 -1.0 166,172 - DVU0129 0.50 +0.3
Or see this region's nucleotide sequence