Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rrf and DVU0087 are separated by 915 nucleotides DVU0087 and DVU0088 overlap by 4 nucleotides
Dv5SA: rrf - 5S ribosomal RNA (VIMSS-AUTO), at 110,870 to 110,986
rrf
DVU0087: DVU0087 - conserved domain protein (TIGR), at 111,902 to 112,396
DVU0087
DVU0088: DVU0088 - Sodium/pantothenate symporter (TIGR), at 112,393 to 113,880
DVU0088
Position (kb)
111
112
113 Strain fitness (log2 ratio)
-2
-1
0
1 at 111.502 kb on + strand at 111.508 kb on - strand at 111.508 kb on - strand at 111.510 kb on - strand at 111.513 kb on + strand at 111.632 kb on + strand at 111.687 kb on + strand at 111.729 kb on + strand at 111.803 kb on + strand at 111.819 kb on + strand at 111.860 kb on + strand at 111.938 kb on - strand at 111.952 kb on - strand, within DVU0087 at 111.965 kb on + strand, within DVU0087 at 112.013 kb on + strand, within DVU0087 at 112.146 kb on - strand, within DVU0087 at 112.241 kb on - strand, within DVU0087 at 112.356 kb on + strand at 112.404 kb on + strand at 112.412 kb on - strand at 112.451 kb on + strand at 112.513 kb on + strand at 112.515 kb on + strand at 112.515 kb on + strand at 112.744 kb on - strand, within DVU0088 at 112.857 kb on + strand, within DVU0088 at 112.964 kb on + strand, within DVU0088 at 113.046 kb on + strand, within DVU0088 at 113.058 kb on + strand, within DVU0088 at 113.162 kb on - strand, within DVU0088 at 113.177 kb on - strand, within DVU0088 at 113.177 kb on - strand, within DVU0088 at 113.285 kb on + strand, within DVU0088 at 113.345 kb on + strand, within DVU0088 at 113.353 kb on - strand, within DVU0088
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 111,502 + -1.7 111,508 - -0.2 111,508 - +0.1 111,510 - -0.3 111,513 + -0.5 111,632 + +0.3 111,687 + -0.4 111,729 + +0.5 111,803 + -0.6 111,819 + -1.9 111,860 + +0.1 111,938 - -1.2 111,952 - DVU0087 0.10 -1.9 111,965 + DVU0087 0.13 -0.2 112,013 + DVU0087 0.22 -0.9 112,146 - DVU0087 0.49 -0.6 112,241 - DVU0087 0.68 -0.5 112,356 + +0.0 112,404 + -1.5 112,412 - +1.1 112,451 + -0.3 112,513 + +0.7 112,515 + -0.3 112,515 + +0.7 112,744 - DVU0088 0.24 -1.2 112,857 + DVU0088 0.31 +0.1 112,964 + DVU0088 0.38 -0.8 113,046 + DVU0088 0.44 +0.5 113,058 + DVU0088 0.45 -1.1 113,162 - DVU0088 0.52 -1.1 113,177 - DVU0088 0.53 -0.8 113,177 - DVU0088 0.53 +0.6 113,285 + DVU0088 0.60 -1.3 113,345 + DVU0088 0.64 +0.2 113,353 - DVU0088 0.65 +0.5
Or see this region's nucleotide sequence