Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0032

Experiment: Formate/Acetate-Sulfite (10/60-20 mM)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDORF25047 and DVU0031 overlap by 1 nucleotidesDVU0031 and DVU0032 overlap by 11 nucleotidesDVU0032 and DVU0033 are separated by 266 nucleotides DORF25047: DORF25047 - no description, at 38,262 to 38,435 DORF25047 DVU0031: DVU0031 - AzlC family protein (TIGR), at 38,435 to 39,172 DVU0031 DVU0032: DVU0032 - conserved hypothetical protein (TIGR), at 39,162 to 39,497 DVU0032 DVU0033: DVU0033 - isochorismatase family protein (TIGR), at 39,764 to 40,378 DVU0033 Position (kb) 39 40Strain fitness (log2 ratio) -2 -1 0 1at 38.203 kb on + strandat 38.211 kb on - strandat 38.284 kb on - strand, within DORF25047at 38.286 kb on + strand, within DORF25047at 38.291 kb on + strand, within DORF25047at 38.291 kb on + strand, within DORF25047at 38.291 kb on - strand, within DORF25047at 38.300 kb on - strand, within DORF25047at 38.309 kb on + strand, within DORF25047at 38.324 kb on + strand, within DORF25047at 38.341 kb on + strand, within DORF25047at 38.383 kb on + strand, within DORF25047at 38.429 kb on + strandat 38.453 kb on + strandat 38.461 kb on - strandat 38.477 kb on + strandat 38.485 kb on - strandat 38.492 kb on + strandat 38.506 kb on - strandat 38.513 kb on + strand, within DVU0031at 38.513 kb on - strand, within DVU0031at 38.513 kb on - strand, within DVU0031at 38.580 kb on + strand, within DVU0031at 38.590 kb on + strand, within DVU0031at 38.598 kb on + strand, within DVU0031at 38.624 kb on + strand, within DVU0031at 38.629 kb on + strand, within DVU0031at 38.629 kb on + strand, within DVU0031at 38.629 kb on + strand, within DVU0031at 38.669 kb on - strand, within DVU0031at 38.729 kb on + strand, within DVU0031at 38.729 kb on + strand, within DVU0031at 38.753 kb on + strand, within DVU0031at 38.768 kb on + strand, within DVU0031at 38.776 kb on - strand, within DVU0031at 38.886 kb on - strand, within DVU0031at 38.893 kb on + strand, within DVU0031at 38.908 kb on - strand, within DVU0031at 38.915 kb on + strand, within DVU0031at 38.923 kb on - strand, within DVU0031at 38.941 kb on - strand, within DVU0031at 38.973 kb on + strand, within DVU0031at 38.998 kb on + strand, within DVU0031at 39.039 kb on - strand, within DVU0031at 39.043 kb on + strand, within DVU0031at 39.072 kb on + strand, within DVU0031at 39.083 kb on - strand, within DVU0031at 39.104 kb on + strandat 39.130 kb on + strandat 39.146 kb on + strandat 39.161 kb on + strandat 39.165 kb on - strandat 39.183 kb on + strandat 39.241 kb on - strand, within DVU0032at 39.265 kb on + strand, within DVU0032at 39.325 kb on + strand, within DVU0032at 39.364 kb on - strand, within DVU0032at 39.499 kb on - strandat 39.499 kb on - strandat 39.508 kb on + strandat 39.538 kb on - strandat 39.653 kb on + strandat 39.658 kb on + strandat 39.658 kb on + strandat 39.679 kb on + strandat 39.788 kb on - strandat 39.813 kb on + strandat 39.838 kb on - strand, within DVU0033at 39.912 kb on - strand, within DVU0033at 40.133 kb on + strand, within DVU0033at 40.141 kb on - strand, within DVU0033at 40.294 kb on + strand, within DVU0033at 40.295 kb on + strand, within DVU0033at 40.295 kb on + strand, within DVU0033at 40.302 kb on - strand, within DVU0033at 40.319 kb on + strandat 40.319 kb on + strandat 40.326 kb on + strandat 40.380 kb on - strandat 40.410 kb on + strandat 40.418 kb on - strandat 40.426 kb on - strandat 40.492 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM)
remove
38,203 + -0.3
38,211 - -0.1
38,284 - DORF25047 0.13 -0.3
38,286 + DORF25047 0.14 -1.5
38,291 + DORF25047 0.17 -0.1
38,291 + DORF25047 0.17 +0.2
38,291 - DORF25047 0.17 -0.2
38,300 - DORF25047 0.22 -0.1
38,309 + DORF25047 0.27 -1.0
38,324 + DORF25047 0.36 +0.1
38,341 + DORF25047 0.45 +0.1
38,383 + DORF25047 0.70 -0.0
38,429 + +0.3
38,453 + -0.1
38,461 - +0.1
38,477 + -0.1
38,485 - +0.0
38,492 + -0.3
38,506 - +0.4
38,513 + DVU0031 0.11 -0.0
38,513 - DVU0031 0.11 +0.1
38,513 - DVU0031 0.11 -0.9
38,580 + DVU0031 0.20 +0.3
38,590 + DVU0031 0.21 -0.2
38,598 + DVU0031 0.22 -0.6
38,624 + DVU0031 0.26 -0.1
38,629 + DVU0031 0.26 -0.3
38,629 + DVU0031 0.26 -0.4
38,629 + DVU0031 0.26 +0.6
38,669 - DVU0031 0.32 +1.6
38,729 + DVU0031 0.40 -2.0
38,729 + DVU0031 0.40 -0.5
38,753 + DVU0031 0.43 -0.2
38,768 + DVU0031 0.45 +0.7
38,776 - DVU0031 0.46 -0.5
38,886 - DVU0031 0.61 +0.3
38,893 + DVU0031 0.62 +0.2
38,908 - DVU0031 0.64 +0.4
38,915 + DVU0031 0.65 -0.3
38,923 - DVU0031 0.66 -1.2
38,941 - DVU0031 0.69 -0.0
38,973 + DVU0031 0.73 -0.4
38,998 + DVU0031 0.76 -1.1
39,039 - DVU0031 0.82 -0.9
39,043 + DVU0031 0.82 -0.2
39,072 + DVU0031 0.86 -0.4
39,083 - DVU0031 0.88 +0.3
39,104 + +0.0
39,130 + -0.4
39,146 + -0.5
39,161 + -0.4
39,165 - -2.1
39,183 + -1.1
39,241 - DVU0032 0.24 -0.6
39,265 + DVU0032 0.31 -0.8
39,325 + DVU0032 0.49 -0.5
39,364 - DVU0032 0.60 -0.4
39,499 - -0.4
39,499 - -0.9
39,508 + -0.1
39,538 - -2.6
39,653 + -0.4
39,658 + +0.1
39,658 + +0.6
39,679 + -0.4
39,788 - -0.1
39,813 + +1.6
39,838 - DVU0033 0.12 +0.2
39,912 - DVU0033 0.24 +0.4
40,133 + DVU0033 0.60 -0.8
40,141 - DVU0033 0.61 -1.8
40,294 + DVU0033 0.86 +0.5
40,295 + DVU0033 0.86 -0.3
40,295 + DVU0033 0.86 -0.7
40,302 - DVU0033 0.87 +0.6
40,319 + -0.2
40,319 + -0.0
40,326 + -0.0
40,380 - +0.5
40,410 + +0.2
40,418 - -1.2
40,426 - +0.4
40,492 + -0.3

Or see this region's nucleotide sequence