Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0001

Experiment: Formate/Acetate-Sulfite (10/60-20 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaA-1 and dnaN are separated by 145 nucleotides DVU0001: dnaA-1 - chromosomal replication initiator protein DnaA (TIGR), at 151 to 1,464 dnaA-1 DVU0002: dnaN - DNA polymerase III, beta subunit (TIGR), at 1,610 to 2,764 dnaN Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.034 kb on - strandat 0.280 kb on + strandat 0.475 kb on + strand, within dnaA-1at 0.535 kb on + strand, within dnaA-1at 0.557 kb on + strand, within dnaA-1at 0.566 kb on + strand, within dnaA-1at 0.568 kb on + strand, within dnaA-1at 0.639 kb on + strand, within dnaA-1at 0.750 kb on + strand, within dnaA-1at 0.895 kb on + strand, within dnaA-1at 0.991 kb on - strand, within dnaA-1at 1.065 kb on - strand, within dnaA-1at 1.196 kb on - strand, within dnaA-1at 1.199 kb on + strand, within dnaA-1

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM)
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34 - -0.8
280 + -0.3
475 + dnaA-1 DVU0001 0.25 -0.7
535 + dnaA-1 DVU0001 0.29 -0.5
557 + dnaA-1 DVU0001 0.31 -2.6
566 + dnaA-1 DVU0001 0.32 -1.1
568 + dnaA-1 DVU0001 0.32 -1.2
639 + dnaA-1 DVU0001 0.37 -1.1
750 + dnaA-1 DVU0001 0.46 -1.9
895 + dnaA-1 DVU0001 0.57 -1.6
991 - dnaA-1 DVU0001 0.64 -1.0
1,065 - dnaA-1 DVU0001 0.70 +0.1
1,196 - dnaA-1 DVU0001 0.80 -2.8
1,199 + dnaA-1 DVU0001 0.80 -1.5

Or see this region's nucleotide sequence