Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2658
Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfite (10/60-20 mM) |
---|---|---|---|---|---|
remove | |||||
2,769,747 | + | +0.8 | |||
2,769,783 | - | -0.4 | |||
2,769,809 | - | -0.2 | |||
2,769,874 | - | +0.1 | |||
2,769,899 | - | -0.6 | |||
2,769,899 | - | -0.3 | |||
2,769,931 | - | -0.6 | |||
2,770,071 | + | +1.8 | |||
2,770,124 | + | DVU2657 | 0.22 | +0.1 | |
2,770,171 | - | DVU2657 | 0.35 | -1.2 | |
2,770,190 | - | DVU2657 | 0.40 | -0.1 | |
2,770,420 | - | +0.4 | |||
2,770,495 | - | +0.4 | |||
2,770,525 | + | -0.2 | |||
2,770,531 | + | -0.1 | |||
2,770,608 | - | -0.1 | |||
2,770,628 | - | -0.2 | |||
2,770,642 | - | +1.0 | |||
2,770,731 | - | -0.1 | |||
2,770,863 | + | DVU2658 | 0.30 | -0.2 | |
2,770,871 | - | DVU2658 | 0.31 | -0.9 | |
2,770,983 | - | DVU2658 | 0.48 | -1.2 | |
2,770,983 | - | DVU2658 | 0.48 | -1.2 | |
2,771,008 | + | DVU2658 | 0.52 | -0.6 | |
2,771,198 | + | DVU2658 | 0.81 | +0.1 | |
2,771,446 | - | DVU2659 | 0.18 | -0.4 | |
2,771,523 | - | DVU2659 | 0.28 | -0.5 | |
2,771,659 | - | DVU2659 | 0.47 | -0.2 | |
2,771,738 | + | DVU2659 | 0.58 | -0.2 | |
2,771,782 | + | DVU2659 | 0.64 | -1.1 | |
2,771,985 | - | +2.2 | |||
2,772,003 | - | +0.0 |
Or see this region's nucleotide sequence