Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1421
Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfite (10/60-20 mM) |
---|---|---|---|---|---|
remove | |||||
1,493,964 | + | atoC | DVU1419 | 0.81 | -0.1 |
1,493,994 | - | atoC | DVU1419 | 0.83 | -0.2 |
1,494,114 | + | -0.9 | |||
1,494,155 | + | -0.2 | |||
1,494,236 | + | -0.5 | |||
1,494,236 | + | -1.6 | |||
1,494,272 | + | +0.2 | |||
1,494,279 | + | -0.3 | |||
1,494,360 | - | DVU1420 | 0.20 | -0.0 | |
1,494,693 | - | +0.2 | |||
1,494,732 | - | -0.5 | |||
1,494,732 | - | -0.2 | |||
1,494,732 | - | -0.1 | |||
1,494,736 | + | -0.5 | |||
1,494,927 | + | DVU1421 | 0.16 | -0.9 | |
1,495,123 | - | DVU1421 | 0.58 | -0.6 | |
1,495,154 | - | DVU1421 | 0.65 | -1.2 | |
1,495,159 | - | DVU1421 | 0.66 | +2.0 | |
1,495,371 | + | +0.0 | |||
1,495,521 | - | DVU1422 | 0.13 | -1.1 | |
1,495,835 | + | DVU1422 | 0.42 | +0.4 |
Or see this region's nucleotide sequence