Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1009
Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfite (10/60-20 mM) |
---|---|---|---|---|---|
remove | |||||
1,103,687 | + | DVU1008 | 0.23 | -0.5 | |
1,103,733 | - | DVU1008 | 0.29 | +0.3 | |
1,103,836 | - | DVU1008 | 0.42 | -0.5 | |
1,103,853 | + | DVU1008 | 0.44 | -1.1 | |
1,103,858 | + | DVU1008 | 0.45 | -0.1 | |
1,103,871 | - | DVU1008 | 0.46 | -0.1 | |
1,103,876 | - | DVU1008 | 0.47 | -0.1 | |
1,103,916 | - | DVU1008 | 0.52 | +1.4 | |
1,103,940 | + | DVU1008 | 0.55 | -0.2 | |
1,104,066 | + | DVU1008 | 0.70 | +0.1 | |
1,104,154 | + | DVU1008 | 0.81 | +0.8 | |
1,104,185 | - | DVU1008 | 0.85 | +0.3 | |
1,104,393 | + | -0.3 | |||
1,104,433 | + | -0.1 | |||
1,104,602 | - | +0.3 | |||
1,104,604 | - | +0.2 | |||
1,104,653 | - | -1.2 | |||
1,104,839 | + | DVU1009 | 0.31 | -0.8 | |
1,104,865 | + | DVU1009 | 0.35 | -0.4 | |
1,105,032 | - | DVU1009 | 0.63 | -0.1 | |
1,105,052 | - | DVU1009 | 0.66 | -0.6 | |
1,105,629 | - | -0.3 | |||
1,105,636 | + | -0.3 | |||
1,105,715 | + | -0.7 | |||
1,105,743 | - | -0.3 | |||
1,105,769 | - | +0.6 | |||
1,105,959 | + | -0.8 | |||
1,106,035 | - | -0.3 | |||
1,106,096 | - | +0.6 | |||
1,106,173 | + | +0.0 | |||
1,106,222 | + | +0.2 |
Or see this region's nucleotide sequence