Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0972 and DVU0973 overlap by 4 nucleotides DVU0973 and DVU0974 are separated by 98 nucleotides DVU0974 and DVU0975 are separated by 32 nucleotides DVU0975 and DVU0976 are separated by 142 nucleotides
DVU0972: DVU0972 - HD domain protein (TIGR), at 1,068,370 to 1,069,635
DVU0972
DVU0973: DVU0973 - 4-hydroxybenzoate octaprenyltransferase, putative (TIGR), at 1,069,632 to 1,070,501
DVU0973
DVU0974: DVU0974 - hypothetical protein (TIGR), at 1,070,600 to 1,070,938
DVU0974
DVU0975: DVU0975 - conserved hypothetical protein (TIGR), at 1,070,971 to 1,071,531
DVU0975
DVU0976: DVU0976 - response regulator (TIGR), at 1,071,674 to 1,072,837
DVU0976
Position (kb)
1070
1071 Strain fitness (log2 ratio)
-1
0
1
2 at 1069.605 kb on - strand at 1069.620 kb on + strand at 1070.405 kb on + strand, within DVU0973 at 1070.552 kb on + strand at 1070.607 kb on + strand at 1070.615 kb on - strand at 1070.655 kb on - strand, within DVU0974 at 1070.896 kb on + strand, within DVU0974 at 1070.897 kb on - strand, within DVU0974 at 1071.027 kb on - strand, within DVU0975 at 1071.066 kb on - strand, within DVU0975 at 1071.122 kb on + strand, within DVU0975 at 1071.122 kb on + strand, within DVU0975 at 1071.414 kb on + strand, within DVU0975 at 1071.540 kb on - strand at 1071.611 kb on + strand at 1071.619 kb on - strand at 1071.685 kb on - strand at 1071.755 kb on + strand at 1071.790 kb on + strand at 1071.810 kb on + strand, within DVU0976 at 1071.818 kb on - strand, within DVU0976 at 1071.823 kb on - strand, within DVU0976 at 1071.866 kb on - strand, within DVU0976 at 1071.894 kb on + strand, within DVU0976
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 1,069,605 - -0.6 1,069,620 + +0.3 1,070,405 + DVU0973 0.89 +0.9 1,070,552 + -0.3 1,070,607 + -1.3 1,070,615 - -0.4 1,070,655 - DVU0974 0.16 +0.0 1,070,896 + DVU0974 0.87 +0.4 1,070,897 - DVU0974 0.88 -0.1 1,071,027 - DVU0975 0.10 -0.4 1,071,066 - DVU0975 0.17 -0.8 1,071,122 + DVU0975 0.27 -0.7 1,071,122 + DVU0975 0.27 +0.9 1,071,414 + DVU0975 0.79 -0.4 1,071,540 - -0.4 1,071,611 + +1.3 1,071,619 - -0.3 1,071,685 - -0.1 1,071,755 + -0.1 1,071,790 + +1.8 1,071,810 + DVU0976 0.12 -0.1 1,071,818 - DVU0976 0.12 +1.6 1,071,823 - DVU0976 0.13 +0.5 1,071,866 - DVU0976 0.16 -0.4 1,071,894 + DVU0976 0.19 -0.1
Or see this region's nucleotide sequence