Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ogt and DVU0792 overlap by 7 nucleotides DVU0792 and tRNA-Ser are separated by 273 nucleotides tRNA-Ser and DVU0793 are separated by 149 nucleotides DVU0793 and fabI are separated by 2 nucleotides fabI and purC are separated by 113 nucleotides
DVU0791: ogt - methylated-DNA--protein-cysteine methyltransferase, DNA-binding domain protein (TIGR), at 877,891 to 878,376
ogt
DVU0792: DVU0792 - conserved domain protein (TIGR), at 878,370 to 878,702
DVU0792
DVU_tRNA-Ser-2: tRNA-Ser - tRNA with anticodon GGA for Ser (VIMSS-AUTO), at 878,976 to 879,067
tRNA-Ser
DVU0793: DVU0793 - hypothetical protein (TIGR), at 879,217 to 879,312
DVU0793
DVU0794: fabI - enoyl-(acyl-carrier-protein) reductase (TIGR), at 879,315 to 880,079
fabI
DVU0795: purC - phosphoribosylaminoimidazole-succinocarboxamide synthase (TIGR), at 880,193 to 881,089
purC
Position (kb) 879
880
881 Strain fitness (log2 ratio) -1
0
1 at 878.346 kb on + strand at 878.381 kb on + strand at 878.437 kb on + strand, within DVU0792 at 878.437 kb on + strand, within DVU0792 at 878.437 kb on + strand, within DVU0792 at 878.445 kb on - strand, within DVU0792 at 878.445 kb on - strand, within DVU0792 at 878.445 kb on - strand, within DVU0792 at 878.498 kb on + strand, within DVU0792 at 878.511 kb on + strand, within DVU0792 at 878.546 kb on - strand, within DVU0792 at 878.555 kb on + strand, within DVU0792 at 878.555 kb on + strand, within DVU0792 at 878.613 kb on - strand, within DVU0792 at 878.623 kb on + strand, within DVU0792 at 878.623 kb on + strand, within DVU0792 at 878.628 kb on + strand, within DVU0792 at 878.628 kb on + strand, within DVU0792 at 878.633 kb on + strand, within DVU0792 at 878.636 kb on - strand, within DVU0792 at 878.682 kb on - strand at 878.684 kb on + strand at 878.689 kb on + strand at 878.707 kb on - strand at 878.721 kb on + strand at 878.729 kb on - strand at 878.729 kb on - strand at 878.792 kb on + strand at 879.216 kb on - strand at 879.298 kb on + strand, within DVU0793 at 879.635 kb on + strand, within fabI at 880.088 kb on + strand at 880.169 kb on + strand at 880.204 kb on + strand at 880.212 kb on - strand at 880.383 kb on + strand, within purC at 880.620 kb on - strand, within purC at 880.779 kb on - strand, within purC
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 878,346 + -0.6 878,381 + -1.0 878,437 + DVU0792 0.20 +0.6 878,437 + DVU0792 0.20 +0.3 878,437 + DVU0792 0.20 -0.7 878,445 - DVU0792 0.23 -0.4 878,445 - DVU0792 0.23 -0.9 878,445 - DVU0792 0.23 -1.2 878,498 + DVU0792 0.38 +0.3 878,511 + DVU0792 0.42 -0.5 878,546 - DVU0792 0.53 +0.0 878,555 + DVU0792 0.56 -0.4 878,555 + DVU0792 0.56 -0.2 878,613 - DVU0792 0.73 -0.7 878,623 + DVU0792 0.76 -0.0 878,623 + DVU0792 0.76 -0.6 878,628 + DVU0792 0.77 -0.1 878,628 + DVU0792 0.77 -0.3 878,633 + DVU0792 0.79 -0.1 878,636 - DVU0792 0.80 +0.6 878,682 - +0.2 878,684 + +0.5 878,689 + +0.3 878,707 - -0.8 878,721 + +1.6 878,729 - +0.0 878,729 - +0.1 878,792 + +0.1 879,216 - -1.2 879,298 + DVU0793 0.84 -0.1 879,635 + fabI DVU0794 0.42 -0.8 880,088 + +0.9 880,169 + -0.3 880,204 + +0.7 880,212 - +0.2 880,383 + purC DVU0795 0.21 +0.8 880,620 - purC DVU0795 0.48 +0.1 880,779 - purC DVU0795 0.65 +0.1
Or see this region's nucleotide sequence