Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0787

Experiment: Formate/Acetate-Sulfite (10/60-20 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0786 and DVU0787 overlap by 17 nucleotidesDVU0787 and mreC are separated by 6 nucleotidesmreC and mreB-1 are separated by 1 nucleotides DVU0786: DVU0786 - penicillin-binding protein (TIGR), at 872,482 to 874,269 DVU0786 DVU0787: DVU0787 - hypothetical protein (TIGR), at 874,253 to 874,723 DVU0787 DVU0788: mreC - rod shape-determining protein MreC (TIGR), at 874,730 to 875,644 mreC DVU0789: mreB-1 - rod shape-determining protein MreB (TIGR), at 875,646 to 876,686 mreB-1 Position (kb) 874 875Strain fitness (log2 ratio) -1 0 1at 874.327 kb on - strand, within DVU0787at 874.493 kb on - strand, within DVU0787at 874.525 kb on - strand, within DVU0787at 874.625 kb on - strand, within DVU0787at 874.778 kb on - strandat 874.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM)
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874,327 - DVU0787 0.16 -0.8
874,493 - DVU0787 0.51 +0.4
874,525 - DVU0787 0.58 -0.8
874,625 - DVU0787 0.79 -0.4
874,778 - +0.9
874,778 - +0.4

Or see this region's nucleotide sequence