Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0692 and narH are separated by 3 nucleotides narH and DVU0694 are separated by 12 nucleotides DVU0694 and DORF6830 are separated by 15 nucleotides
DVU0692: DVU0692 - molybdopterin oxidoreductase, transmembrane subunit, putative (TIGR), at 766,527 to 767,786
DVU0692
DVU0693: narH - molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative (TIGR), containing cytochrome c heme-binding site (VIMSS_AUTO), at 767,790 to 768,557
narH
DVU0694: DVU0694 - molybdopterin oxidoreductase, molybdopterin-binding subunit, putative (TIGR), at 768,570 to 770,645
DVU0694
DORF6830: DORF6830 - SEED: FIG00602532: hypothetical protein, at 770,661 to 771,293
DORF6830
Position (kb) 768
769
770
771 Strain fitness (log2 ratio) -2
-1
0
1
2 at 767.656 kb on + strand, within DVU0692 at 767.696 kb on - strand at 767.778 kb on - strand at 767.794 kb on + strand at 767.939 kb on + strand, within narH at 768.005 kb on + strand, within narH at 768.051 kb on + strand, within narH at 768.066 kb on - strand, within narH at 768.124 kb on - strand, within narH at 768.147 kb on + strand, within narH at 768.154 kb on + strand, within narH at 768.162 kb on - strand, within narH at 768.169 kb on + strand, within narH at 768.310 kb on + strand, within narH at 768.318 kb on - strand, within narH at 768.398 kb on + strand, within narH at 768.411 kb on - strand, within narH at 768.493 kb on - strand at 768.623 kb on - strand at 768.698 kb on + strand at 768.706 kb on - strand at 768.773 kb on - strand at 768.786 kb on - strand, within DVU0694 at 768.806 kb on - strand, within DVU0694 at 768.837 kb on + strand, within DVU0694 at 768.856 kb on + strand, within DVU0694 at 768.864 kb on - strand, within DVU0694 at 768.864 kb on - strand, within DVU0694 at 769.044 kb on + strand, within DVU0694 at 769.052 kb on - strand, within DVU0694 at 769.136 kb on + strand, within DVU0694 at 769.144 kb on - strand, within DVU0694 at 769.197 kb on - strand, within DVU0694 at 769.253 kb on - strand, within DVU0694 at 769.349 kb on + strand, within DVU0694 at 769.368 kb on - strand, within DVU0694 at 769.409 kb on - strand, within DVU0694 at 769.444 kb on + strand, within DVU0694 at 769.452 kb on - strand, within DVU0694 at 769.520 kb on - strand, within DVU0694 at 769.548 kb on - strand, within DVU0694 at 769.627 kb on - strand, within DVU0694 at 769.675 kb on + strand, within DVU0694 at 769.675 kb on + strand, within DVU0694 at 769.742 kb on + strand, within DVU0694 at 769.806 kb on - strand, within DVU0694 at 769.840 kb on - strand, within DVU0694 at 769.902 kb on + strand, within DVU0694 at 769.946 kb on - strand, within DVU0694 at 769.973 kb on - strand, within DVU0694 at 770.012 kb on + strand, within DVU0694 at 770.020 kb on - strand, within DVU0694 at 770.093 kb on - strand, within DVU0694 at 770.111 kb on - strand, within DVU0694 at 770.133 kb on + strand, within DVU0694 at 770.293 kb on - strand, within DVU0694 at 770.342 kb on - strand, within DVU0694 at 770.427 kb on + strand, within DVU0694 at 770.472 kb on - strand at 770.629 kb on + strand at 770.694 kb on - strand at 770.697 kb on + strand at 770.702 kb on + strand at 770.793 kb on + strand, within DORF6830 at 770.793 kb on + strand, within DORF6830 at 770.924 kb on + strand, within DORF6830 at 770.924 kb on + strand, within DORF6830 at 771.040 kb on + strand, within DORF6830 at 771.077 kb on + strand, within DORF6830 at 771.077 kb on + strand, within DORF6830 at 771.087 kb on - strand, within DORF6830 at 771.187 kb on + strand, within DORF6830 at 771.195 kb on - strand, within DORF6830 at 771.195 kb on - strand, within DORF6830 at 771.296 kb on - strand at 771.297 kb on - strand at 771.318 kb on - strand at 771.504 kb on + strand at 771.534 kb on + strand at 771.564 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 767,656 + DVU0692 0.90 -0.8 767,696 - -0.4 767,778 - -0.1 767,794 + -0.8 767,939 + narH DVU0693 0.19 -0.6 768,005 + narH DVU0693 0.28 -1.9 768,051 + narH DVU0693 0.34 +1.6 768,066 - narH DVU0693 0.36 -0.4 768,124 - narH DVU0693 0.43 -1.2 768,147 + narH DVU0693 0.46 -0.7 768,154 + narH DVU0693 0.47 -0.8 768,162 - narH DVU0693 0.48 -0.2 768,169 + narH DVU0693 0.49 -0.8 768,310 + narH DVU0693 0.68 -1.6 768,318 - narH DVU0693 0.69 -0.4 768,398 + narH DVU0693 0.79 -1.6 768,411 - narH DVU0693 0.81 -0.4 768,493 - -1.2 768,623 - +0.9 768,698 + +0.2 768,706 - -0.1 768,773 - -1.1 768,786 - DVU0694 0.10 -1.1 768,806 - DVU0694 0.11 -0.6 768,837 + DVU0694 0.13 -0.6 768,856 + DVU0694 0.14 -1.0 768,864 - DVU0694 0.14 -0.8 768,864 - DVU0694 0.14 -0.8 769,044 + DVU0694 0.23 -1.0 769,052 - DVU0694 0.23 -0.6 769,136 + DVU0694 0.27 -0.4 769,144 - DVU0694 0.28 -1.1 769,197 - DVU0694 0.30 -0.5 769,253 - DVU0694 0.33 +1.3 769,349 + DVU0694 0.38 -0.4 769,368 - DVU0694 0.38 -0.6 769,409 - DVU0694 0.40 -1.0 769,444 + DVU0694 0.42 -0.6 769,452 - DVU0694 0.42 -0.4 769,520 - DVU0694 0.46 -0.5 769,548 - DVU0694 0.47 -0.5 769,627 - DVU0694 0.51 -0.5 769,675 + DVU0694 0.53 +0.2 769,675 + DVU0694 0.53 +1.2 769,742 + DVU0694 0.56 -0.5 769,806 - DVU0694 0.60 -0.8 769,840 - DVU0694 0.61 -1.6 769,902 + DVU0694 0.64 -0.5 769,946 - DVU0694 0.66 -0.1 769,973 - DVU0694 0.68 -0.9 770,012 + DVU0694 0.69 -0.8 770,020 - DVU0694 0.70 +0.3 770,093 - DVU0694 0.73 -1.3 770,111 - DVU0694 0.74 +1.1 770,133 + DVU0694 0.75 +2.2 770,293 - DVU0694 0.83 +0.2 770,342 - DVU0694 0.85 -0.9 770,427 + DVU0694 0.89 -0.1 770,472 - -1.0 770,629 + +0.2 770,694 - -0.8 770,697 + -1.1 770,702 + -1.2 770,793 + DORF6830 0.21 +0.5 770,793 + DORF6830 0.21 -0.6 770,924 + DORF6830 0.42 -0.7 770,924 + DORF6830 0.42 -0.8 771,040 + DORF6830 0.60 -0.8 771,077 + DORF6830 0.66 -0.9 771,077 + DORF6830 0.66 -2.2 771,087 - DORF6830 0.67 -0.0 771,187 + DORF6830 0.83 -1.2 771,195 - DORF6830 0.84 -0.5 771,195 - DORF6830 0.84 -0.6 771,296 - -1.1 771,297 - -0.2 771,318 - +0.0 771,504 + +0.4 771,534 + -0.3 771,564 + -0.4
Or see this region's nucleotide sequence