Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0646

Experiment: Formate/Acetate-Sulfite (10/60-20 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0645 and cobI are separated by 209 nucleotidescobI and DVU0647 are separated by 1 nucleotidesDVU0647 and fepC overlap by 23 nucleotides DVU0645: DVU0645 - methyl-accepting chemotaxis protein (TIGR), at 714,819 to 716,858 DVU0645 DVU0646: cobI - precorrin-2 C20-methyltransferase (TIGR), at 717,068 to 717,838 cobI DVU0647: DVU0647 - iron compound ABC transporter, periplasmic iron compount-binding protein, putative (TIGR), at 717,840 to 718,754 DVU0647 DVU0648: fepC - iron compound ABC transporter, ATP-binding protein (TIGR), at 718,732 to 719,547 fepC Position (kb) 717 718Strain fitness (log2 ratio) -2 -1 0 1 2at 716.072 kb on - strand, within DVU0645at 716.098 kb on + strand, within DVU0645at 716.106 kb on - strand, within DVU0645at 716.117 kb on + strand, within DVU0645at 716.190 kb on - strand, within DVU0645at 716.193 kb on - strand, within DVU0645at 716.249 kb on - strand, within DVU0645at 716.267 kb on - strand, within DVU0645at 716.325 kb on - strand, within DVU0645at 716.356 kb on - strand, within DVU0645at 716.475 kb on - strand, within DVU0645at 716.527 kb on + strand, within DVU0645at 716.529 kb on + strand, within DVU0645at 716.568 kb on - strand, within DVU0645at 716.586 kb on - strand, within DVU0645at 716.601 kb on - strand, within DVU0645at 716.669 kb on - strandat 716.672 kb on + strandat 716.689 kb on + strandat 716.689 kb on + strandat 716.842 kb on + strandat 716.860 kb on - strandat 716.860 kb on - strandat 716.909 kb on - strandat 716.998 kb on + strandat 717.022 kb on + strandat 717.073 kb on - strandat 717.157 kb on + strand, within cobIat 717.165 kb on - strand, within cobIat 717.264 kb on - strand, within cobIat 717.342 kb on + strand, within cobIat 717.406 kb on + strand, within cobIat 717.414 kb on - strand, within cobIat 717.480 kb on - strand, within cobIat 717.519 kb on + strand, within cobIat 717.628 kb on + strand, within cobIat 717.687 kb on - strand, within cobIat 717.711 kb on - strand, within cobIat 717.758 kb on - strand, within cobIat 717.761 kb on + strand, within cobIat 717.763 kb on - strandat 717.769 kb on - strandat 717.925 kb on + strandat 717.977 kb on - strand, within DVU0647at 718.134 kb on - strand, within DVU0647at 718.134 kb on - strand, within DVU0647at 718.134 kb on - strand, within DVU0647at 718.297 kb on + strand, within DVU0647at 718.307 kb on - strand, within DVU0647at 718.381 kb on + strand, within DVU0647at 718.405 kb on + strand, within DVU0647at 718.413 kb on - strand, within DVU0647at 718.413 kb on - strand, within DVU0647at 718.516 kb on + strand, within DVU0647at 718.542 kb on + strand, within DVU0647at 718.611 kb on + strand, within DVU0647at 718.711 kb on + strandat 718.737 kb on - strandat 718.744 kb on + strandat 718.746 kb on + strandat 718.746 kb on + strandat 718.754 kb on - strandat 718.754 kb on - strandat 718.779 kb on + strandat 718.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM)
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716,072 - DVU0645 0.61 -0.4
716,098 + DVU0645 0.63 -1.4
716,106 - DVU0645 0.63 +0.5
716,117 + DVU0645 0.64 -0.6
716,190 - DVU0645 0.67 -0.5
716,193 - DVU0645 0.67 -0.2
716,249 - DVU0645 0.70 +0.9
716,267 - DVU0645 0.71 -0.0
716,325 - DVU0645 0.74 +0.1
716,356 - DVU0645 0.75 -0.0
716,475 - DVU0645 0.81 -0.8
716,527 + DVU0645 0.84 +0.0
716,529 + DVU0645 0.84 -0.7
716,568 - DVU0645 0.86 -0.3
716,586 - DVU0645 0.87 +0.9
716,601 - DVU0645 0.87 +0.4
716,669 - +0.0
716,672 + -0.2
716,689 + -0.6
716,689 + -0.3
716,842 + +0.0
716,860 - +0.3
716,860 - -0.4
716,909 - -0.1
716,998 + -1.1
717,022 + -2.1
717,073 - +0.9
717,157 + cobI DVU0646 0.12 -0.9
717,165 - cobI DVU0646 0.13 -2.1
717,264 - cobI DVU0646 0.25 -0.4
717,342 + cobI DVU0646 0.36 -0.5
717,406 + cobI DVU0646 0.44 -0.5
717,414 - cobI DVU0646 0.45 +0.1
717,480 - cobI DVU0646 0.53 -1.1
717,519 + cobI DVU0646 0.58 +0.7
717,628 + cobI DVU0646 0.73 -2.3
717,687 - cobI DVU0646 0.80 -0.5
717,711 - cobI DVU0646 0.83 -1.1
717,758 - cobI DVU0646 0.89 +2.4
717,761 + cobI DVU0646 0.90 -0.9
717,763 - -2.4
717,769 - -0.6
717,925 + -0.3
717,977 - DVU0647 0.15 +0.4
718,134 - DVU0647 0.32 +0.1
718,134 - DVU0647 0.32 -1.5
718,134 - DVU0647 0.32 +0.1
718,297 + DVU0647 0.50 -0.2
718,307 - DVU0647 0.51 -0.4
718,381 + DVU0647 0.59 +0.1
718,405 + DVU0647 0.62 -0.3
718,413 - DVU0647 0.63 +0.1
718,413 - DVU0647 0.63 +0.1
718,516 + DVU0647 0.74 +0.9
718,542 + DVU0647 0.77 +1.4
718,611 + DVU0647 0.84 +0.3
718,711 + +0.2
718,737 - -0.2
718,744 + -0.6
718,746 + +0.0
718,746 + +0.5
718,754 - +0.3
718,754 - +0.9
718,779 + +0.1
718,782 - -0.6

Or see this region's nucleotide sequence