Experiment: library passed through aphids in food, 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4760 and Psyr_4761 are separated by 97 nucleotides Psyr_4761 and Psyr_4762 are separated by 45 nucleotides Psyr_4762 and Psyr_4763 are separated by 184 nucleotides Psyr_4763 and Psyr_4764 are separated by 85 nucleotides
Psyr_4760: Psyr_4760 - conserved hypothetical protein, at 5,635,726 to 5,636,064
_4760
Psyr_4761: Psyr_4761 - DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase, at 5,636,162 to 5,636,974
_4761
Psyr_4762: Psyr_4762 - conserved hypothetical protein, at 5,637,020 to 5,637,886
_4762
Psyr_4763: Psyr_4763 - Peptidase C56, PfpI, at 5,638,071 to 5,638,610
_4763
Psyr_4764: Psyr_4764 - SAM-dependent methyltransferase, at 5,638,696 to 5,639,892
_4764
Position (kb) 5637
5638 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.090 kb on + strand at 5636.091 kb on - strand at 5636.091 kb on - strand at 5636.091 kb on - strand at 5636.091 kb on - strand at 5636.091 kb on - strand at 5636.094 kb on + strand at 5636.094 kb on + strand at 5636.094 kb on + strand at 5636.095 kb on - strand at 5636.108 kb on + strand at 5636.108 kb on + strand at 5636.108 kb on + strand at 5636.108 kb on + strand at 5636.109 kb on - strand at 5636.109 kb on - strand at 5636.109 kb on - strand at 5636.110 kb on + strand at 5636.110 kb on + strand at 5636.110 kb on + strand at 5636.110 kb on + strand at 5636.111 kb on - strand at 5636.111 kb on - strand at 5636.111 kb on - strand at 5636.111 kb on - strand at 5636.111 kb on - strand at 5636.111 kb on - strand at 5636.128 kb on - strand at 5636.158 kb on + strand at 5636.158 kb on + strand at 5636.158 kb on + strand at 5636.158 kb on + strand at 5636.158 kb on + strand at 5636.159 kb on - strand at 5636.159 kb on - strand at 5636.159 kb on - strand at 5636.159 kb on - strand at 5636.184 kb on + strand at 5636.185 kb on - strand at 5636.185 kb on - strand at 5636.460 kb on + strand, within Psyr_4761 at 5636.460 kb on + strand, within Psyr_4761 at 5636.460 kb on + strand, within Psyr_4761 at 5636.460 kb on + strand, within Psyr_4761 at 5636.460 kb on + strand, within Psyr_4761 at 5636.460 kb on + strand, within Psyr_4761 at 5636.461 kb on - strand, within Psyr_4761 at 5636.461 kb on - strand, within Psyr_4761 at 5636.461 kb on - strand, within Psyr_4761 at 5636.461 kb on - strand, within Psyr_4761 at 5636.461 kb on - strand, within Psyr_4761 at 5636.461 kb on - strand, within Psyr_4761 at 5636.461 kb on - strand, within Psyr_4761 at 5636.464 kb on + strand, within Psyr_4761 at 5636.464 kb on + strand, within Psyr_4761 at 5636.464 kb on + strand, within Psyr_4761 at 5636.464 kb on + strand, within Psyr_4761 at 5636.465 kb on - strand, within Psyr_4761 at 5636.541 kb on + strand, within Psyr_4761 at 5636.659 kb on - strand, within Psyr_4761 at 5636.799 kb on + strand, within Psyr_4761 at 5636.799 kb on + strand, within Psyr_4761 at 5636.800 kb on - strand, within Psyr_4761 at 5636.800 kb on - strand, within Psyr_4761 at 5636.800 kb on - strand, within Psyr_4761 at 5636.800 kb on - strand, within Psyr_4761 at 5636.964 kb on - strand at 5636.964 kb on - strand at 5637.057 kb on + strand at 5637.057 kb on + strand at 5637.069 kb on + strand at 5637.070 kb on - strand at 5637.087 kb on + strand at 5637.087 kb on + strand at 5637.087 kb on + strand at 5637.087 kb on + strand at 5637.088 kb on - strand at 5637.166 kb on + strand, within Psyr_4762 at 5637.166 kb on + strand, within Psyr_4762 at 5637.166 kb on + strand, within Psyr_4762 at 5637.166 kb on + strand, within Psyr_4762 at 5637.167 kb on - strand, within Psyr_4762 at 5637.167 kb on - strand, within Psyr_4762 at 5637.167 kb on - strand at 5637.214 kb on + strand, within Psyr_4762 at 5637.309 kb on + strand, within Psyr_4762 at 5637.309 kb on + strand, within Psyr_4762 at 5637.309 kb on + strand, within Psyr_4762 at 5637.310 kb on - strand, within Psyr_4762 at 5637.310 kb on - strand, within Psyr_4762 at 5637.310 kb on - strand, within Psyr_4762 at 5637.310 kb on - strand, within Psyr_4762 at 5637.391 kb on - strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.414 kb on + strand, within Psyr_4762 at 5637.415 kb on - strand, within Psyr_4762 at 5637.415 kb on - strand, within Psyr_4762 at 5637.415 kb on - strand, within Psyr_4762 at 5637.415 kb on - strand, within Psyr_4762 at 5637.415 kb on - strand, within Psyr_4762 at 5637.415 kb on - strand, within Psyr_4762 at 5637.415 kb on - strand, within Psyr_4762 at 5637.415 kb on - strand, within Psyr_4762 at 5637.415 kb on - strand, within Psyr_4762 at 5637.474 kb on + strand, within Psyr_4762 at 5637.474 kb on + strand, within Psyr_4762 at 5637.474 kb on + strand, within Psyr_4762 at 5637.474 kb on + strand, within Psyr_4762 at 5637.474 kb on + strand, within Psyr_4762 at 5637.475 kb on - strand, within Psyr_4762 at 5637.475 kb on - strand, within Psyr_4762 at 5637.475 kb on - strand, within Psyr_4762 at 5637.651 kb on - strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.872 kb on + strand at 5637.872 kb on + strand at 5637.873 kb on - strand at 5637.887 kb on - strand at 5637.895 kb on - strand at 5637.958 kb on + strand at 5637.958 kb on + strand at 5638.042 kb on + strand at 5638.043 kb on - strand at 5638.049 kb on - strand at 5638.076 kb on + strand at 5638.076 kb on + strand at 5638.076 kb on + strand at 5638.077 kb on - strand at 5638.077 kb on - strand at 5638.077 kb on - strand at 5638.077 kb on - strand at 5638.077 kb on - strand at 5638.099 kb on + strand at 5638.099 kb on + strand at 5638.287 kb on + strand, within Psyr_4763 at 5638.315 kb on + strand, within Psyr_4763 at 5638.315 kb on + strand, within Psyr_4763 at 5638.316 kb on - strand, within Psyr_4763 at 5638.339 kb on + strand, within Psyr_4763 at 5638.339 kb on + strand, within Psyr_4763 at 5638.339 kb on + strand, within Psyr_4763 at 5638.339 kb on + strand, within Psyr_4763 at 5638.340 kb on - strand, within Psyr_4763 at 5638.340 kb on - strand, within Psyr_4763 at 5638.441 kb on + strand, within Psyr_4763 at 5638.442 kb on - strand, within Psyr_4763 at 5638.442 kb on - strand, within Psyr_4763 at 5638.448 kb on + strand, within Psyr_4763 at 5638.449 kb on - strand, within Psyr_4763 at 5638.449 kb on - strand, within Psyr_4763 at 5638.625 kb on + strand at 5638.625 kb on + strand at 5638.625 kb on + strand at 5638.625 kb on + strand at 5638.626 kb on - strand at 5638.665 kb on - strand at 5638.665 kb on - strand at 5638.666 kb on + strand at 5638.666 kb on + strand at 5638.666 kb on + strand at 5638.667 kb on - strand at 5638.765 kb on + strand at 5638.765 kb on + strand at 5638.766 kb on - strand at 5638.784 kb on + strand at 5638.785 kb on - strand at 5638.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours remove 5,636,090 + -1.0 5,636,090 + +0.2 5,636,090 + +0.7 5,636,090 + -1.3 5,636,090 + -1.0 5,636,090 + -0.6 5,636,090 + -0.7 5,636,090 + -0.8 5,636,091 - -0.1 5,636,091 - -1.7 5,636,091 - -0.6 5,636,091 - -0.1 5,636,091 - +0.0 5,636,094 + -1.2 5,636,094 + +0.1 5,636,094 + -1.6 5,636,095 - +0.3 5,636,108 + +0.5 5,636,108 + -0.6 5,636,108 + +0.7 5,636,108 + +0.7 5,636,109 - -0.4 5,636,109 - +0.8 5,636,109 - +0.2 5,636,110 + -0.1 5,636,110 + -0.4 5,636,110 + -0.2 5,636,110 + +0.4 5,636,111 - +0.2 5,636,111 - -0.6 5,636,111 - -0.9 5,636,111 - -1.7 5,636,111 - -0.9 5,636,111 - -1.0 5,636,128 - -0.7 5,636,158 + -0.7 5,636,158 + -0.0 5,636,158 + -1.5 5,636,158 + -0.6 5,636,158 + -1.1 5,636,159 - -1.4 5,636,159 - +0.2 5,636,159 - -0.0 5,636,159 - -0.4 5,636,184 + +0.8 5,636,185 - -0.2 5,636,185 - -1.2 5,636,460 + Psyr_4761 0.37 +0.2 5,636,460 + Psyr_4761 0.37 +0.3 5,636,460 + Psyr_4761 0.37 -1.1 5,636,460 + Psyr_4761 0.37 -0.8 5,636,460 + Psyr_4761 0.37 -0.7 5,636,460 + Psyr_4761 0.37 +0.4 5,636,461 - Psyr_4761 0.37 -0.8 5,636,461 - Psyr_4761 0.37 -0.4 5,636,461 - Psyr_4761 0.37 +0.4 5,636,461 - Psyr_4761 0.37 +0.1 5,636,461 - Psyr_4761 0.37 +0.1 5,636,461 - Psyr_4761 0.37 -0.2 5,636,461 - Psyr_4761 0.37 +0.6 5,636,464 + Psyr_4761 0.37 -0.1 5,636,464 + Psyr_4761 0.37 -1.0 5,636,464 + Psyr_4761 0.37 -0.5 5,636,464 + Psyr_4761 0.37 +0.3 5,636,465 - Psyr_4761 0.37 -0.3 5,636,541 + Psyr_4761 0.47 +0.6 5,636,659 - Psyr_4761 0.61 -1.1 5,636,799 + Psyr_4761 0.78 +0.3 5,636,799 + Psyr_4761 0.78 +1.1 5,636,800 - Psyr_4761 0.78 +0.6 5,636,800 - Psyr_4761 0.78 -0.1 5,636,800 - Psyr_4761 0.78 +0.3 5,636,800 - Psyr_4761 0.78 -0.6 5,636,964 - +1.0 5,636,964 - -0.5 5,637,057 + -0.7 5,637,057 + +0.5 5,637,069 + -0.3 5,637,070 - -0.5 5,637,087 + -0.3 5,637,087 + -0.8 5,637,087 + -0.1 5,637,087 + +0.6 5,637,088 - +0.0 5,637,166 + Psyr_4762 0.17 +0.3 5,637,166 + Psyr_4762 0.17 -1.0 5,637,166 + Psyr_4762 0.17 +0.4 5,637,166 + Psyr_4762 0.17 -1.3 5,637,167 - Psyr_4762 0.17 -0.0 5,637,167 - Psyr_4762 0.17 -0.9 5,637,167 - +1.9 5,637,214 + Psyr_4762 0.22 -0.2 5,637,309 + Psyr_4762 0.33 +1.1 5,637,309 + Psyr_4762 0.33 +0.1 5,637,309 + Psyr_4762 0.33 -1.9 5,637,310 - Psyr_4762 0.33 +0.3 5,637,310 - Psyr_4762 0.33 -0.4 5,637,310 - Psyr_4762 0.33 -0.5 5,637,310 - Psyr_4762 0.33 +0.4 5,637,391 - Psyr_4762 0.43 -0.4 5,637,414 + Psyr_4762 0.45 -0.2 5,637,414 + Psyr_4762 0.45 -0.6 5,637,414 + Psyr_4762 0.45 +0.1 5,637,414 + Psyr_4762 0.45 +0.1 5,637,414 + Psyr_4762 0.45 -0.1 5,637,414 + Psyr_4762 0.45 -0.2 5,637,414 + Psyr_4762 0.45 -0.3 5,637,414 + Psyr_4762 0.45 -1.0 5,637,414 + Psyr_4762 0.45 -1.4 5,637,414 + Psyr_4762 0.45 -0.1 5,637,414 + Psyr_4762 0.45 -0.4 5,637,414 + Psyr_4762 0.45 -0.0 5,637,415 - Psyr_4762 0.46 -0.5 5,637,415 - Psyr_4762 0.46 +0.2 5,637,415 - Psyr_4762 0.46 -0.3 5,637,415 - Psyr_4762 0.46 -1.0 5,637,415 - Psyr_4762 0.46 -0.7 5,637,415 - Psyr_4762 0.46 -0.4 5,637,415 - Psyr_4762 0.46 +0.1 5,637,415 - Psyr_4762 0.46 -0.9 5,637,415 - Psyr_4762 0.46 +0.2 5,637,474 + Psyr_4762 0.52 -0.2 5,637,474 + Psyr_4762 0.52 +0.6 5,637,474 + Psyr_4762 0.52 +0.0 5,637,474 + Psyr_4762 0.52 -0.2 5,637,474 + Psyr_4762 0.52 -0.5 5,637,475 - Psyr_4762 0.52 +0.0 5,637,475 - Psyr_4762 0.52 +1.8 5,637,475 - Psyr_4762 0.52 +0.9 5,637,651 - Psyr_4762 0.73 -0.1 5,637,786 + Psyr_4762 0.88 +0.5 5,637,786 + Psyr_4762 0.88 -0.4 5,637,786 + Psyr_4762 0.88 -0.2 5,637,786 + Psyr_4762 0.88 -0.2 5,637,786 + Psyr_4762 0.88 -0.0 5,637,786 + Psyr_4762 0.88 -0.3 5,637,786 + Psyr_4762 0.88 -0.1 5,637,786 + Psyr_4762 0.88 +0.1 5,637,786 + Psyr_4762 0.88 -0.5 5,637,786 + Psyr_4762 0.88 -0.1 5,637,786 + Psyr_4762 0.88 +1.3 5,637,786 + Psyr_4762 0.88 -0.5 5,637,786 + Psyr_4762 0.88 -0.0 5,637,786 + Psyr_4762 0.88 -0.5 5,637,786 + Psyr_4762 0.88 -0.1 5,637,786 + Psyr_4762 0.88 -0.2 5,637,786 + Psyr_4762 0.88 +0.3 5,637,786 + Psyr_4762 0.88 +0.0 5,637,786 + Psyr_4762 0.88 +0.9 5,637,786 + Psyr_4762 0.88 +0.1 5,637,786 + Psyr_4762 0.88 -0.0 5,637,786 + Psyr_4762 0.88 -0.1 5,637,786 + Psyr_4762 0.88 -0.1 5,637,786 + Psyr_4762 0.88 -0.7 5,637,786 + Psyr_4762 0.88 -1.0 5,637,786 + Psyr_4762 0.88 +1.6 5,637,786 + Psyr_4762 0.88 -0.3 5,637,786 + Psyr_4762 0.88 -0.3 5,637,786 + Psyr_4762 0.88 -0.2 5,637,786 + Psyr_4762 0.88 +0.1 5,637,787 - Psyr_4762 0.88 +0.5 5,637,787 - Psyr_4762 0.88 -0.0 5,637,787 - Psyr_4762 0.88 -1.0 5,637,787 - Psyr_4762 0.88 +0.6 5,637,787 - Psyr_4762 0.88 -0.2 5,637,787 - Psyr_4762 0.88 -1.1 5,637,787 - Psyr_4762 0.88 -0.3 5,637,787 - Psyr_4762 0.88 -1.6 5,637,787 - Psyr_4762 0.88 +0.3 5,637,787 - Psyr_4762 0.88 -0.6 5,637,787 - Psyr_4762 0.88 -0.3 5,637,787 - Psyr_4762 0.88 -0.4 5,637,787 - Psyr_4762 0.88 +0.6 5,637,787 - Psyr_4762 0.88 +0.2 5,637,787 - Psyr_4762 0.88 -0.8 5,637,787 - Psyr_4762 0.88 -0.2 5,637,787 - Psyr_4762 0.88 -1.1 5,637,872 + +0.2 5,637,872 + -0.9 5,637,873 - +0.1 5,637,887 - -0.1 5,637,895 - -0.7 5,637,958 + +0.1 5,637,958 + -0.2 5,638,042 + +0.8 5,638,043 - -2.0 5,638,049 - -0.5 5,638,076 + +0.4 5,638,076 + -0.9 5,638,076 + -0.7 5,638,077 - -0.6 5,638,077 - -1.3 5,638,077 - -0.2 5,638,077 - -0.6 5,638,077 - -0.5 5,638,099 + +0.9 5,638,099 + -0.5 5,638,287 + Psyr_4763 0.40 -0.1 5,638,315 + Psyr_4763 0.45 -0.2 5,638,315 + Psyr_4763 0.45 -0.5 5,638,316 - Psyr_4763 0.45 +0.1 5,638,339 + Psyr_4763 0.50 +0.4 5,638,339 + Psyr_4763 0.50 +0.5 5,638,339 + Psyr_4763 0.50 -0.1 5,638,339 + Psyr_4763 0.50 -0.7 5,638,340 - Psyr_4763 0.50 -0.2 5,638,340 - Psyr_4763 0.50 +0.1 5,638,441 + Psyr_4763 0.69 -1.2 5,638,442 - Psyr_4763 0.69 -0.1 5,638,442 - Psyr_4763 0.69 +0.6 5,638,448 + Psyr_4763 0.70 +0.1 5,638,449 - Psyr_4763 0.70 -0.1 5,638,449 - Psyr_4763 0.70 -0.6 5,638,625 + +0.5 5,638,625 + +0.2 5,638,625 + -0.8 5,638,625 + -0.9 5,638,626 - +0.2 5,638,665 - +0.6 5,638,665 - -0.9 5,638,666 + -0.4 5,638,666 + +0.4 5,638,666 + +0.6 5,638,667 - -0.4 5,638,765 + +0.3 5,638,765 + +0.4 5,638,766 - -0.2 5,638,784 + -1.7 5,638,785 - +0.0 5,638,785 - +0.5
Or see this region's nucleotide sequence