Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3470

Experiment: library passed through aphids in food, 24 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 24 hours
4,137,784	+		Psyr_3469	0.75	-2.6
4,137,784	+		Psyr_3469	0.75	+0.0
4,137,784	+		Psyr_3469	0.75	-1.5
4,137,784	+		Psyr_3469	0.75	-0.2
4,137,784	+		Psyr_3469	0.75	+0.4
4,137,784	+		Psyr_3469	0.75	-2.0
4,137,784	+		Psyr_3469	0.75	-1.9
4,137,785	-		Psyr_3469	0.75	-0.7
4,137,785	-		Psyr_3469	0.75	-0.2
4,137,785	-		Psyr_3469	0.75	-0.7
4,137,785	-		Psyr_3469	0.75	-0.3
4,137,785	-		Psyr_3469	0.75	-1.4
4,137,785	-		Psyr_3469	0.75	-1.8
4,137,785	-		Psyr_3469	0.75	+0.4
4,137,785	-		Psyr_3469	0.75	-1.4
4,138,091	+		Psyr_3469	0.83	-1.3
4,138,091	+		Psyr_3469	0.83	-0.7
4,138,092	-		Psyr_3469	0.83	+0.6
4,138,092	-		Psyr_3469	0.83	-0.5
4,138,151	-		Psyr_3469	0.85	-1.7
4,138,201	+		Psyr_3469	0.86	+0.4
4,138,201	+		Psyr_3469	0.86	-2.0
4,138,201	+		Psyr_3469	0.86	-1.0
4,138,201	+		Psyr_3469	0.86	-2.6
4,138,201	+		Psyr_3469	0.86	-0.7
4,138,202	-		Psyr_3469	0.86	-1.6
4,138,202	-		Psyr_3469	0.86	-2.4
4,138,202	-		Psyr_3469	0.86	-0.7
4,138,303	+		Psyr_3469	0.89	-1.8
4,138,303	+		Psyr_3469	0.89	-0.7
4,138,303	+		Psyr_3469	0.89	-1.6
4,138,303	+		Psyr_3469	0.89	-1.8
4,138,303	+		Psyr_3469	0.89	-2.9
4,138,303	+		Psyr_3469	0.89	-0.9
4,138,303	+		Psyr_3469	0.89	+1.4
4,138,304	-		Psyr_3469	0.89	+1.3
4,138,304	-		Psyr_3469	0.89	-0.8
4,138,304	-		Psyr_3469	0.89	-0.1
4,138,304	-		Psyr_3469	0.89	-1.8
4,138,357	+				-0.7
4,138,357	+				-3.8
4,138,358	-				-3.5
4,138,358	-				-0.4
4,138,358	-				-0.0
4,138,358	-				-0.3
4,138,358	-				-1.6
4,138,358	-				-0.3
4,138,358	-				-0.7
4,138,393	+				-2.8
4,138,393	+				-2.7
4,138,393	+				-1.4
4,138,393	+				-1.6
4,138,394	-				-0.9
4,138,394	-				-1.5
4,138,394	-				-1.9
4,138,394	-				-0.9
4,138,394	-				-1.9
4,138,394	-				-0.3
4,138,394	-				-1.1
4,138,397	+				-1.5
4,138,397	+				-1.7
4,138,397	+				-1.1
4,138,398	-				-1.4
4,138,398	-				-1.4
4,138,398	-				-2.4
4,138,399	+				-1.5
4,138,399	+				+0.3
4,138,399	+				-0.7
4,138,400	-				-0.1
4,138,400	-				-1.7
4,138,400	-				+0.1
4,138,432	+				-0.4
4,138,433	-				-1.4
4,138,433	-				+0.4
4,138,433	-				-1.4
4,138,433	-				-1.6
4,138,433	-				-2.3
4,138,822	+				-1.1
4,138,823	-				-1.9
4,138,899	-				-1.0
4,138,902	+				-0.2
4,138,902	+				-1.8
4,138,902	+				-0.3
4,138,903	-				-1.9
4,138,903	-				-2.7
4,138,903	-				-1.1
4,138,903	-				-1.3
4,139,292	+		Psyr_3470	0.32	-2.6
4,139,292	+		Psyr_3470	0.32	-2.8
4,139,292	+		Psyr_3470	0.32	-1.3
4,139,292	+		Psyr_3470	0.32	-1.4
4,139,292	+		Psyr_3470	0.32	-1.2
4,139,292	+		Psyr_3470	0.32	-0.2
4,139,293	-		Psyr_3470	0.32	-1.0
4,139,293	-		Psyr_3470	0.32	-0.3
4,139,293	-		Psyr_3470	0.32	-2.8
4,139,293	-		Psyr_3470	0.32	-1.5
4,139,293	-		Psyr_3470	0.32	-0.9
4,139,293	-		Psyr_3470	0.32	-4.0
4,139,293	-		Psyr_3470	0.32	-2.2
4,139,293	-		Psyr_3470	0.32	-0.4
4,139,293	-		Psyr_3470	0.32	-2.1
4,139,293	-		Psyr_3470	0.32	-1.6
4,139,293	-		Psyr_3470	0.32	-1.8
4,139,293	-		Psyr_3470	0.32	-1.8
4,139,293	-		Psyr_3470	0.32	-0.7
4,139,293	-		Psyr_3470	0.32	-0.7
4,139,293	-		Psyr_3470	0.32	-1.0
4,139,293	-		Psyr_3470	0.32	-1.9
4,139,293	-		Psyr_3470	0.32	-2.0
4,139,293	-		Psyr_3470	0.32	-0.7
4,139,293	-		Psyr_3470	0.32	-1.1
4,139,301	+		Psyr_3470	0.32	-1.1
4,139,350	+		Psyr_3470	0.36	-2.2
4,139,350	+		Psyr_3470	0.36	-1.2
4,139,350	+		Psyr_3470	0.36	-1.4
4,139,351	-		Psyr_3470	0.36	-2.3
4,139,351	-		Psyr_3470	0.36	-2.7
4,139,351	-		Psyr_3470	0.36	-2.8
4,139,351	-		Psyr_3470	0.36	-0.9
4,139,351	-		Psyr_3470	0.36	-0.2
4,139,380	+		Psyr_3470	0.37	-0.4
4,139,380	+		Psyr_3470	0.37	-1.2
4,139,381	-		Psyr_3470	0.37	+2.1
4,139,472	+		Psyr_3470	0.43	-2.3
4,139,620	+		Psyr_3470	0.52	-1.7
4,139,620	+		Psyr_3470	0.52	-1.7
4,139,621	-		Psyr_3470	0.53	-0.5
4,139,621	-		Psyr_3470	0.53	-0.7
4,139,689	+		Psyr_3470	0.57	-0.3
4,139,690	-		Psyr_3470	0.57	-0.7
4,139,710	-		Psyr_3470	0.58	-0.6
4,139,721	+		Psyr_3470	0.59	-1.2
4,139,721	+		Psyr_3470	0.59	-0.6
4,139,721	+		Psyr_3470	0.59	-0.4
4,139,721	+		Psyr_3470	0.59	-1.3
4,139,721	+		Psyr_3470	0.59	-0.8
4,139,721	+		Psyr_3470	0.59	-1.4
4,139,721	+		Psyr_3470	0.59	-1.9
4,139,722	-		Psyr_3470	0.59	-1.2
4,139,722	-		Psyr_3470	0.59	-1.7
4,139,722	-		Psyr_3470	0.59	-2.2
4,139,722	-		Psyr_3470	0.59	-2.3
4,139,722	-		Psyr_3470	0.59	-1.6
4,139,722	-		Psyr_3470	0.59	-0.4
4,139,722	-		Psyr_3470	0.59	-1.2
4,139,803	+		Psyr_3470	0.64	-1.7
4,139,804	-		Psyr_3470	0.64	-0.1
4,139,804	-		Psyr_3470	0.64	-0.6
4,139,910	+		Psyr_3470	0.71	-3.4
4,139,911	-		Psyr_3470	0.71	-0.4
4,139,911	-		Psyr_3470	0.71	-1.1
4,139,911	-		Psyr_3470	0.71	-2.5
4,139,916	+		Psyr_3470	0.71	-0.8
4,139,917	-		Psyr_3470	0.71	-0.7
4,139,917	-		Psyr_3470	0.71	-0.3
4,139,917	-		Psyr_3470	0.71	-1.9
4,139,917	-		Psyr_3470	0.71	-0.7
4,139,972	+		Psyr_3470	0.75	+0.8
4,139,972	+		Psyr_3470	0.75	-1.0
4,139,972	+		Psyr_3470	0.75	-0.1
4,139,973	-		Psyr_3470	0.75	-2.3
4,139,973	-		Psyr_3470	0.75	-0.7
4,139,973	-		Psyr_3470	0.75	-1.1
4,139,973	-		Psyr_3470	0.75	-1.5
4,139,973	-		Psyr_3470	0.75	-0.4
4,139,973	-		Psyr_3470	0.75	-1.8
4,139,973	-		Psyr_3470	0.75	-0.2
4,139,973	-		Psyr_3470	0.75	-1.5
4,139,973	-		Psyr_3470	0.75	+0.1
4,139,976	+		Psyr_3470	0.75	-1.4
4,139,977	-		Psyr_3470	0.75	-3.1
4,139,977	-		Psyr_3470	0.75	-2.4
4,139,977	-		Psyr_3470	0.75	-0.7
4,139,977	-		Psyr_3470	0.75	-1.4
4,139,977	-		Psyr_3470	0.75	-1.0
4,140,318	+				-0.7
4,140,318	+				-0.1
4,140,318	+				-1.6
4,140,319	-				-0.0
4,140,319	-				-1.7
4,140,319	-				-0.4
4,140,323	-				-1.5
4,140,323	-				-1.0
4,140,330	+				-0.8
4,140,330	+				-1.1
4,140,361	+				-2.7
4,140,370	+				-0.1
4,140,370	+				-2.8
4,140,371	-				-1.0
4,140,391	+				-1.3
4,140,457	+				-1.2
4,140,457	+				-1.2
4,140,457	+				-1.9
4,140,457	+				-2.4
4,140,457	+				-1.5
4,140,457	+				-1.8
4,140,458	-				-3.5
4,140,458	-				+0.1
4,140,458	-				-2.1
4,140,458	-				-0.4
4,140,458	-				-2.2
4,140,458	-				-1.8
4,140,460	+				-2.0
4,140,461	-				+0.2
4,140,469	+				+0.4
4,140,504	+				+0.3
4,140,505	-				-1.9
4,140,597	+		Psyr_3471	0.10	-3.3
4,140,597	+		Psyr_3471	0.10	-2.0
4,140,597	+		Psyr_3471	0.10	-1.3
4,140,597	+		Psyr_3471	0.10	-2.0
4,140,597	+		Psyr_3471	0.10	-1.1
4,140,597	+		Psyr_3471	0.10	-1.2
4,140,598	-		Psyr_3471	0.10	-1.2
4,140,598	-		Psyr_3471	0.10	-0.7
4,140,606	+		Psyr_3471	0.10	-1.8
4,140,607	-		Psyr_3471	0.11	+0.3
4,140,607	-		Psyr_3471	0.11	-1.9
4,140,611	+		Psyr_3471	0.11	-3.6
4,140,612	-		Psyr_3471	0.11	-0.4
4,140,612	-		Psyr_3471	0.11	-1.8
4,140,619	+		Psyr_3471	0.11	-1.8
4,140,619	+		Psyr_3471	0.11	-1.0
4,140,620	-		Psyr_3471	0.11	-2.3
4,140,804	-		Psyr_3471	0.20	+0.4
4,140,832	+		Psyr_3471	0.21	-2.6
4,140,940	+		Psyr_3471	0.27	-0.9
4,140,940	+		Psyr_3471	0.27	-0.5
4,140,940	+		Psyr_3471	0.27	+0.6
4,140,940	+		Psyr_3471	0.27	-2.1
4,140,940	+		Psyr_3471	0.27	-2.7
4,140,940	+		Psyr_3471	0.27	-1.3
4,140,940	+		Psyr_3471	0.27	-3.7
4,140,940	+		Psyr_3471	0.27	-1.8
4,140,940	+		Psyr_3471	0.27	-2.6
4,140,941	-		Psyr_3471	0.27	-0.5
4,140,941	-		Psyr_3471	0.27	-0.1
4,140,941	-		Psyr_3471	0.27	-0.8
4,140,941	-		Psyr_3471	0.27	-1.8
4,140,941	-		Psyr_3471	0.27	-2.5
4,140,941	-		Psyr_3471	0.27	-2.4
4,140,941	-		Psyr_3471	0.27	-0.4
4,140,941	-		Psyr_3471	0.27	-1.4
4,140,941	-		Psyr_3471	0.27	-1.3
4,140,941	-		Psyr_3471	0.27	-1.6
4,140,941	-		Psyr_3471	0.27	-2.1
4,140,941	-		Psyr_3471	0.27	-0.7
4,141,039	+		Psyr_3471	0.31	-1.4
4,141,039	+		Psyr_3471	0.31	-1.6
4,141,039	+		Psyr_3471	0.31	-0.3
4,141,040	-		Psyr_3471	0.32	-2.3
4,141,040	-		Psyr_3471	0.32	-1.1
4,141,040	-		Psyr_3471	0.32	-1.4
4,141,040	-		Psyr_3471	0.32	-0.1
4,141,040	-		Psyr_3471	0.32	-3.3
4,141,040	-		Psyr_3471	0.32	-1.9
4,141,040	-		Psyr_3471	0.32	-1.0
4,141,040	-		Psyr_3471	0.32	-2.1
4,141,040	-		Psyr_3471	0.32	-1.0
4,141,224	-		Psyr_3471	0.40	-1.0