Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3469

Experiment: library passed through aphids in food, 24 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 24 hours
4,134,367	+		Psyr_3468	0.78	-1.7
4,134,368	-		Psyr_3468	0.78	-1.9
4,134,368	-		Psyr_3468	0.78	-0.4
4,134,409	+		Psyr_3468	0.79	-0.9
4,134,409	+		Psyr_3468	0.79	-0.5
4,134,410	-		Psyr_3468	0.79	+0.5
4,134,410	-		Psyr_3468	0.79	-1.0
4,134,416	+		Psyr_3468	0.80	-0.8
4,134,416	+		Psyr_3468	0.80	+0.5
4,134,417	-		Psyr_3468	0.80	-0.9
4,134,566	-		Psyr_3468	0.85	-1.7
4,134,566	-		Psyr_3468	0.85	+1.5
4,134,566	-		Psyr_3468	0.85	-0.2
4,134,566	-		Psyr_3468	0.85	-0.5
4,134,599	-		Psyr_3468	0.86	+0.4
4,134,599	-		Psyr_3468	0.86	-1.3
4,134,599	-		Psyr_3468	0.86	-0.1
4,134,599	-		Psyr_3468	0.86	-0.3
4,134,599	-		Psyr_3468	0.86	-0.7
4,134,599	-		Psyr_3468	0.86	-0.7
4,134,599	-		Psyr_3468	0.86	-0.0
4,134,599	-		Psyr_3468	0.86	-0.5
4,134,625	+		Psyr_3468	0.87	+0.4
4,134,625	+		Psyr_3468	0.87	-0.0
4,134,626	-		Psyr_3468	0.87	-1.1
4,134,655	+		Psyr_3468	0.88	-1.8
4,134,656	-		Psyr_3468	0.88	-2.0
4,134,817	+				+0.6
4,134,817	+				-0.0
4,134,817	+				+0.1
4,134,818	-				+0.3
4,134,876	+				+1.4
4,134,876	+				+0.1
4,134,877	-				+0.1
4,134,877	-				+0.1
4,134,901	+				-0.9
4,134,902	-				+0.0
4,134,902	-				-0.9
4,134,904	+				+0.3
4,134,904	+				+0.8
4,134,904	+				+0.6
4,135,019	-				-1.0
4,135,151	-				-1.7
4,135,285	+				-1.8
4,135,286	-				-1.9
4,135,286	-				+0.6
4,135,498	+		Psyr_3469	0.11	-0.5
4,135,499	-		Psyr_3469	0.11	-1.4
4,135,499	-		Psyr_3469	0.11	-1.5
4,135,774	-		Psyr_3469	0.18	-1.0
4,135,852	+		Psyr_3469	0.20	-0.8
4,135,852	+		Psyr_3469	0.20	-0.7
4,135,852	+		Psyr_3469	0.20	+1.6
4,135,852	+		Psyr_3469	0.20	-2.9
4,135,852	+		Psyr_3469	0.20	-1.3
4,135,852	+		Psyr_3469	0.20	-1.7
4,135,852	+		Psyr_3469	0.20	-2.3
4,135,853	-		Psyr_3469	0.20	-2.2
4,135,853	-		Psyr_3469	0.20	-1.8
4,135,853	-		Psyr_3469	0.20	-2.0
4,135,871	+		Psyr_3469	0.21	-2.2
4,135,871	+		Psyr_3469	0.21	-1.4
4,135,872	-		Psyr_3469	0.21	-0.3
4,135,888	+		Psyr_3469	0.21	-1.9
4,135,888	+		Psyr_3469	0.21	-3.0
4,135,996	+		Psyr_3469	0.24	-2.1
4,135,996	+		Psyr_3469	0.24	-0.6
4,135,996	+		Psyr_3469	0.24	-1.2
4,135,997	-		Psyr_3469	0.24	-1.3
4,136,182	+		Psyr_3469	0.30	-1.1
4,136,182	+		Psyr_3469	0.30	+0.9
4,136,197	+		Psyr_3469	0.30	+0.2
4,136,197	+		Psyr_3469	0.30	+0.1
4,136,197	+		Psyr_3469	0.30	-0.8
4,136,198	-		Psyr_3469	0.30	-1.4
4,136,198	-		Psyr_3469	0.30	-0.5
4,136,198	-		Psyr_3469	0.30	-1.3
4,136,198	-		Psyr_3469	0.30	-1.7
4,136,506	+		Psyr_3469	0.39	-1.9
4,136,506	+		Psyr_3469	0.39	-1.7
4,136,507	-		Psyr_3469	0.39	-0.7
4,136,507	-		Psyr_3469	0.39	-2.3
4,136,507	-		Psyr_3469	0.39	-0.3
4,136,507	-		Psyr_3469	0.39	-0.6
4,136,582	-		Psyr_3469	0.41	-1.8
4,136,588	+		Psyr_3469	0.41	-1.3
4,136,589	-		Psyr_3469	0.41	-2.8
4,136,609	+		Psyr_3469	0.42	-2.2
4,136,610	-		Psyr_3469	0.42	-0.7
4,136,714	-		Psyr_3469	0.45	-1.3
4,136,714	-		Psyr_3469	0.45	-1.6
4,136,878	+		Psyr_3469	0.49	-1.1
4,136,879	-		Psyr_3469	0.49	-1.0
4,136,913	+		Psyr_3469	0.50	-0.6
4,136,913	+		Psyr_3469	0.50	-0.1
4,136,914	-		Psyr_3469	0.50	-0.9
4,136,914	-		Psyr_3469	0.50	-2.8
4,136,914	-		Psyr_3469	0.50	+1.3
4,136,990	-		Psyr_3469	0.52	+0.6
4,137,290	-		Psyr_3469	0.61	-1.6
4,137,290	-		Psyr_3469	0.61	-1.8
4,137,290	-		Psyr_3469	0.61	-2.4
4,137,290	-		Psyr_3469	0.61	+0.1
4,137,501	+		Psyr_3469	0.67	-1.6
4,137,502	-		Psyr_3469	0.67	-0.8
4,137,604	+		Psyr_3469	0.69	-0.6
4,137,605	-		Psyr_3469	0.69	-0.4
4,137,684	-		Psyr_3469	0.72	-1.5
4,137,784	+		Psyr_3469	0.75	-2.6
4,137,784	+		Psyr_3469	0.75	+0.0
4,137,784	+		Psyr_3469	0.75	-1.5
4,137,784	+		Psyr_3469	0.75	-0.2
4,137,784	+		Psyr_3469	0.75	+0.4
4,137,784	+		Psyr_3469	0.75	-2.0
4,137,784	+		Psyr_3469	0.75	-1.9
4,137,785	-		Psyr_3469	0.75	-0.7
4,137,785	-		Psyr_3469	0.75	-0.2
4,137,785	-		Psyr_3469	0.75	-0.7
4,137,785	-		Psyr_3469	0.75	-0.3
4,137,785	-		Psyr_3469	0.75	-1.4
4,137,785	-		Psyr_3469	0.75	-1.8
4,137,785	-		Psyr_3469	0.75	+0.4
4,137,785	-		Psyr_3469	0.75	-1.4
4,138,091	+		Psyr_3469	0.83	-1.3
4,138,091	+		Psyr_3469	0.83	-0.7
4,138,092	-		Psyr_3469	0.83	+0.6
4,138,092	-		Psyr_3469	0.83	-0.5
4,138,151	-		Psyr_3469	0.85	-1.7
4,138,201	+		Psyr_3469	0.86	+0.4
4,138,201	+		Psyr_3469	0.86	-2.0
4,138,201	+		Psyr_3469	0.86	-1.0
4,138,201	+		Psyr_3469	0.86	-2.6
4,138,201	+		Psyr_3469	0.86	-0.7
4,138,202	-		Psyr_3469	0.86	-1.6
4,138,202	-		Psyr_3469	0.86	-2.4
4,138,202	-		Psyr_3469	0.86	-0.7
4,138,303	+		Psyr_3469	0.89	-1.8
4,138,303	+		Psyr_3469	0.89	-0.7
4,138,303	+		Psyr_3469	0.89	-1.6
4,138,303	+		Psyr_3469	0.89	-1.8
4,138,303	+		Psyr_3469	0.89	-2.9
4,138,303	+		Psyr_3469	0.89	-0.9
4,138,303	+		Psyr_3469	0.89	+1.4
4,138,304	-		Psyr_3469	0.89	+1.3
4,138,304	-		Psyr_3469	0.89	-0.8
4,138,304	-		Psyr_3469	0.89	-0.1
4,138,304	-		Psyr_3469	0.89	-1.8
4,138,357	+				-0.7
4,138,357	+				-3.8
4,138,358	-				-3.5
4,138,358	-				-0.4
4,138,358	-				-0.0
4,138,358	-				-0.3
4,138,358	-				-1.6
4,138,358	-				-0.3
4,138,358	-				-0.7
4,138,393	+				-2.8
4,138,393	+				-2.7
4,138,393	+				-1.4
4,138,393	+				-1.6
4,138,394	-				-0.9
4,138,394	-				-1.5
4,138,394	-				-1.9
4,138,394	-				-0.9
4,138,394	-				-1.9
4,138,394	-				-0.3
4,138,394	-				-1.1
4,138,397	+				-1.5
4,138,397	+				-1.7
4,138,397	+				-1.1
4,138,398	-				-1.4
4,138,398	-				-1.4
4,138,398	-				-2.4
4,138,399	+				-1.5
4,138,399	+				+0.3
4,138,399	+				-0.7
4,138,400	-				-0.1
4,138,400	-				-1.7
4,138,400	-				+0.1
4,138,432	+				-0.4
4,138,433	-				-1.4
4,138,433	-				+0.4
4,138,433	-				-1.4
4,138,433	-				-1.6
4,138,433	-				-2.3
4,138,822	+				-1.1
4,138,823	-				-1.9
4,138,899	-				-1.0
4,138,902	+				-0.2
4,138,902	+				-1.8
4,138,902	+				-0.3
4,138,903	-				-1.9
4,138,903	-				-2.7
4,138,903	-				-1.1
4,138,903	-				-1.3
4,139,292	+		Psyr_3470	0.32	-2.6
4,139,292	+		Psyr_3470	0.32	-2.8
4,139,292	+		Psyr_3470	0.32	-1.3
4,139,292	+		Psyr_3470	0.32	-1.4
4,139,292	+		Psyr_3470	0.32	-1.2
4,139,292	+		Psyr_3470	0.32	-0.2
4,139,293	-		Psyr_3470	0.32	-1.0
4,139,293	-		Psyr_3470	0.32	-0.3
4,139,293	-		Psyr_3470	0.32	-2.8
4,139,293	-		Psyr_3470	0.32	-1.5
4,139,293	-		Psyr_3470	0.32	-0.9
4,139,293	-		Psyr_3470	0.32	-4.0
4,139,293	-		Psyr_3470	0.32	-2.2
4,139,293	-		Psyr_3470	0.32	-0.4
4,139,293	-		Psyr_3470	0.32	-2.1
4,139,293	-		Psyr_3470	0.32	-1.6
4,139,293	-		Psyr_3470	0.32	-1.8
4,139,293	-		Psyr_3470	0.32	-1.8
4,139,293	-		Psyr_3470	0.32	-0.7
4,139,293	-		Psyr_3470	0.32	-0.7
4,139,293	-		Psyr_3470	0.32	-1.0
4,139,293	-		Psyr_3470	0.32	-1.9
4,139,293	-		Psyr_3470	0.32	-2.0
4,139,293	-		Psyr_3470	0.32	-0.7
4,139,293	-		Psyr_3470	0.32	-1.1
4,139,301	+		Psyr_3470	0.32	-1.1
4,139,350	+		Psyr_3470	0.36	-2.2
4,139,350	+		Psyr_3470	0.36	-1.2
4,139,350	+		Psyr_3470	0.36	-1.4
4,139,351	-		Psyr_3470	0.36	-2.3
4,139,351	-		Psyr_3470	0.36	-2.7
4,139,351	-		Psyr_3470	0.36	-2.8
4,139,351	-		Psyr_3470	0.36	-0.9
4,139,351	-		Psyr_3470	0.36	-0.2
4,139,380	+		Psyr_3470	0.37	-0.4
4,139,380	+		Psyr_3470	0.37	-1.2
4,139,381	-		Psyr_3470	0.37	+2.1
4,139,472	+		Psyr_3470	0.43	-2.3
4,139,620	+		Psyr_3470	0.52	-1.7
4,139,620	+		Psyr_3470	0.52	-1.7
4,139,621	-		Psyr_3470	0.53	-0.5
4,139,621	-		Psyr_3470	0.53	-0.7
4,139,689	+		Psyr_3470	0.57	-0.3
4,139,690	-		Psyr_3470	0.57	-0.7